Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq58141 91.5 1e-13 seq55256 91.5 1e-13 seq51818 91.5 1e-13 >seq58141 Length=6910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 6527 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 6468 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 6467 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 6411 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 6410 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 6379 >seq55256 Length=4481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 2861 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 2802 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 2801 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 2745 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 2744 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 2713 >seq51818 Length=4510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 1650 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 1709 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 1710 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 1766 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 1767 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 1798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338515055178960