Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq49253 93.3 4e-14 seq51150 87.8 2e-12 seq51149 87.8 2e-12 seq60261 86.0 6e-12 seq56944 84.2 2e-11 seq41697 82.4 7e-11 >seq49253 Length=1508 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || ||| || ||| | ||||| ||||| || ||| Sbjct 1336 GTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1277 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||||| || |||||||| || ||||| | || ||| ||| Sbjct 1276 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 1217 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | ||||| || | |||||||| || || || || || Sbjct 1216 ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1157 Query 94991 TTCACAAAGATCTGCATGCTT 95011 ||||| |||||||||||| || Sbjct 1156 TTCACGAAGATCTGCATGGTT 1136 >seq51150 Length=3240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 3014 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 3073 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 3074 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 3132 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 3133 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 3169 >seq51149 Length=3250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 3024 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 3083 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 3084 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 3142 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 3143 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 3179 >seq60261 Length=7311 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGC 94861 ||| | |||||| ||||| || | ||| || ||| || | || || ||||| ||| Sbjct 999 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCA--GGGTACGACCGTCCTCGAGC 1056 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | | |||||||| ||||| || || || ||||| | || Sbjct 1057 TGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATC 1116 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||| ||| ||| ||||||| ||||| || | |||||||| || || Sbjct 1117 TTCTGCTTCACGTTCTCGATCGTGTCAGATGACTCGACCTCGAGGGTGATGGTCTTGCCG 1176 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| ||||||||||||| Sbjct 1177 GTGAGGGTCTTCACGAAGATCTGCATGC 1204 >seq56944 Length=8418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| | ||||| ||||| || || Sbjct 7615 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTCCTCGAGCTGCTTGCCA 7556 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||| || ||||||||||| || ||||| | || || |||| Sbjct 7555 GCAAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTG 7496 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | | ||||| || | ||||| || || || || || || Sbjct 7495 ACGTTCTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTACCGGTCAGGGTC 7436 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 7435 TTGACGAAGATCTGCATGC 7417 >seq41697 Length=921 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| || ||| || ||| | ||||| ||||| Sbjct 25 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTG 84 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| ||||||| | | ||||| || ||||| || || || ||||| | ||| || Sbjct 85 CTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 144 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCA 94981 ||| ||| ||| ||||| || ||| || || || | |||||||| || || Sbjct 145 CTGCTTCACGTTCTCGATGGTGTC-GC-TGGACTCAACCTCGAGGGTGATGGTCTTGCCG 202 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| ||||||||||| Sbjct 203 GTGAGGGTCTTCACGAAGATCTGCAT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447952235816400