Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq58066 235 1e-56 seq53831 96.9 9e-15 >seq58066 Length=10012 Score = 235 bits (260), Expect = 1e-56 Identities = 856/1325 (65%), Gaps = 26/1325 (2%) Strand=Plus/Minus Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || || |||||||| || || || || || || |||||||| || || || || Sbjct 6887 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 6828 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 ||||| || || || || ||| ||| || || ||||| || || || ||||| Sbjct 6827 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTC 6768 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| | || ||| || | |||| || ||||||||||||||| | || | ||| Sbjct 6767 TTCTACGGCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGG 6708 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 || ||||||||||| |||| || || || | ||| ||||| | || | | Sbjct 6707 TCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAG 6648 Query 364060 GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA----GACAATTCCCGCACA 364115 | ||||| || || |||||| || || | ||| ||| | Sbjct 6647 GAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCC----A 6592 Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175 | |||| ||||| |||||| | || |||||||| ||||| || || ||||| ||| |||| Sbjct 6591 GGAGCTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTA 6532 Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAA 364235 ||| || | |||||| |||||||||||||||||||||| || || || ||| | || Sbjct 6531 CAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAA 6472 Query 364236 CCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGC 364295 ||| || || ||| | | | ||||| | ||||||||| ||||| || ||||| || Sbjct 6471 CCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 6412 Query 364296 GTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGA 364355 ||| ||||||| || ||| | | | || |||||||||||| | || | || Sbjct 6411 CTCGCTCGCGCTGCCCAAGTTCATCACCAACGGCGAGTTTGACCACCAGAAGCTGCACGA 6352 Query 364356 CGTAACCT-ATCATGCT-ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCA 364413 ||| | | | || | || || || ||||||| ||||||| || || || || Sbjct 6351 CGT--CGTGAAGGTGGTCACCAAGAACCTTAACAAGGTGATCGACATCAACTACTACCCC 6294 Query 364414 ATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGC 364473 | || || ||| || || ||||| || | || || || | || || |||||| Sbjct 6293 GTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGC 6234 Query 364474 CTCGCTGACGTTTTTATG---ATGCTCAA--GATGGCATTTGATTCGCCTGACGCTCGTG 364528 || || ||||| || ||| |||| | | ||| | || || | || || || | Sbjct 6233 CTGGCCGACGTCTTCATGATCATGCGCCACCCGTGGGA---GA-GCGAC-GAGGCCCGCG 6179 Query 364529 TTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATT 364588 || || | ||||| || || || || | ||||| || || ||| || Sbjct 6178 AGCTCAACCGCGCCATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGC 6119 Query 364589 TGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAAT 364648 | || | | |||| | ||| || || ||||| || || || |||| || Sbjct 6118 TCGCGCAGGTCGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGC 6059 Query 364649 TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTT 364708 ||||| || || ||| ||| ||| || | | | ||| |||||| ||||| || Sbjct 6058 TCCAGCCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCG 5999 Query 364709 CCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTT 364768 ||||| | |||| ||| |||||||| ||| | ||||||||||||||||| | Sbjct 5998 CCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCT 5939 Query 364769 CTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATT 364828 | || | |||||||| || |||||||||||||| || || | || | ||| | || Sbjct 5938 CGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACA 5879 Query 364829 CACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTT 364888 | ||||| | || |||| || || | || || || || |||| | || || Sbjct 5878 CCCGCCGTATCCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTCC 5819 Query 364889 CCGACCGCGGGCTGTGGGGTGACAGC-ATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 | ||||| || | || | | || | |||||| | || || | || || || Sbjct 5818 AGCAGCGCGGCCTCT-GGTCGCCCGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCG 5760 Query 364948 GTGCAGAACATTCCAGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGA 365006 || ||| || || |||| | || || || | ||| | ||||| ||||| ||||| Sbjct 5759 GTCCAGCGCA-TCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGA 5701 Query 365007 AATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAG 365066 | | ||| |||| || ||||| ||||||||| || | ||| ||||| Sbjct 5700 GCTCCCGCAGCGCGTCATCATCGACATGGCCGCCGATCGCTCGGCCTACATCGACCAGAG 5641 Query 365067 CCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTT 365126 ||||||| | ||||| | |||| |||| | | |||||||| || || ||||| || Sbjct 5640 CCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTT 5581 Query 365127 CTACG 365131 ||||| Sbjct 5580 CTACG 5576 >seq53831 Length=10026 Score = 96.9 bits (106), Expect = 9e-15 Identities = 268/410 (65%), Gaps = 12/410 (3%) Strand=Plus/Minus Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || |||||||||||||| || || || | || || || ||||| ||| | || || Sbjct 9916 GGCGGAGGAAAGCGCAAGGGAGCCTTCACGATCTACCTGGAGCCCTGGCATTCGGACATC 9857 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 || ||||| || || ||| |||| ||| || || ||||| || || || || || Sbjct 9856 TTCGAGTTCCTCGATCTCAGGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGACCTC 9797 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| || || ||||| | || | || ||||||||||| ||||| ||| | Sbjct 9796 TTCTACGCCCTGTGGGTCCCCGATCTATTCATGAAGCGCGTCGAGGCTGGT--------G 9745 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 | || || || ||||| || |||||| || || ||||| ||| | | || Sbjct 9744 GCGCTGTTCGATCCCAACGAAGCACCGGGTCTTCAGGACGTCTGGGGAGACAAGTTTGAG 9685 Query 364060 GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAG 364119 | || |||| || || ||| || || || || || || ||| || Sbjct 9684 GAACTCTACGCCCGCTACGAGCGGGAAGGCCGCGCCCGCCGCACCATCAAGGCCCAGGAG 9625 Query 364120 CTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAA 364179 || ||||| || ||| | || || || | ||||| || || ||||| ||| | || || Sbjct 9624 CTGTGGTTCGCGATCCTCGAGTCACAAGTGGAGACGGGCACGCCCTACATGCTCTATAAG 9565 Query 364180 GATTCGTGCAAC--CGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 || | |||||| || |||| ||||| |||||||| || || || ||| Sbjct 9564 GACGCATGCAACAGCGAAAGT--AACCACCAGCACCTCGGCACCATCCAG 9517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302343464303180