Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq43031 104 2e-17 seq41697 96.9 3e-15 seq53109 95.1 1e-14 seq54650 91.5 1e-13 seq49253 87.8 2e-12 seq40434 87.8 2e-12 seq60261 86.0 5e-12 seq58772 86.0 5e-12 seq56944 86.0 5e-12 seq2743 86.0 5e-12 seq52280 84.2 2e-11 seq5343 84.2 2e-11 >seq43031 Length=7181 Score = 104 bits (114), Expect = 2e-17 Identities = 122/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 23983 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| ||| |||||| | || || || || | || || || | || ||| |||| ||| Sbjct 224 CAACCAACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTC 165 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| ||| |||||| |||||| | || || ||||||||| ||||| || ||||| ||| Sbjct 164 GAGTCCAGCGACACGATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCT 105 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||||| ||| | || || | || |||||||| ||||| || Sbjct 104 CCCGATCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGA 61 >seq41697 Length=921 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| || ||| ||| Sbjct 229 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCAG 170 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || || |||||| ||||| || ||||| |||||||| || Sbjct 169 CGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 110 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | ||||||||| ||||| || | | | | | | ||| || || Sbjct 109 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 50 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 49 CATCCAGAAGGAGTCCAC 32 >seq53109 Length=5902 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| || ||| | | | Sbjct 4237 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACCCTCGAGGTAGAGTCGAGC 4296 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| ||||||||||| Sbjct 4297 GACACCATCGAGAACGTAAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 4356 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||| ||||| ||||| |||| Sbjct 4357 CAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGATG 4393 >seq54650 Length=1408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | || || || || | ||||| || | || ||| |||| || ||| | Sbjct 1172 AACATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCG 1231 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||||||| | || || || ||||| ||||| || ||||| || || || Sbjct 1232 AGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 1291 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||||||||| ||||| || | | | | || ||| || Sbjct 1292 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTAC 1351 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 1352 AACATCCAGAAGGAGTCGAC 1371 >seq49253 Length=1508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || ||||||| |||| |||||| ||| | Sbjct 1368 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAGTCCAGC 1427 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 1428 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 1487 Query 24111 CAGAGACTGATTTACGGCGGC 24131 ||| | || || | || |||| Sbjct 1488 CAGCGCCTCATCTTCGCCGGC 1508 >seq40434 Length=1363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | || || || || | ||||| || | || ||| |||| || ||| | Sbjct 180 AACATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCG 121 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||||||| | || || || ||||| ||||| || ||||| || || || Sbjct 120 AGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 61 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||| | || || | || ||||||||| ||||| || Sbjct 60 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGA 23 >seq60261 Length=7311 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 1202 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCATCT 1143 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| || ||||| ||||||||||| Sbjct 1142 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 1083 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | ||| || ||| Sbjct 1082 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 1023 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 1022 ATCCAGAAGGAGTCTAC 1006 >seq58772 Length=3437 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| |||| |||||| | | Sbjct 2079 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGAGCTCC 2138 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| || ||||| ||||||||||| Sbjct 2139 GACACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 2198 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||| || || || Sbjct 2199 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGA 2233 >seq56944 Length=8418 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/164 (72%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 23983 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| ||| |||||| | || || || || | || || || | || ||| |||| ||| Sbjct 6954 CAAGCAACAATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTC 7013 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| | ||||||||||||| | || || || |||||| ||||| |||||||| || Sbjct 7014 GAGTCGTCCGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCC 7073 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||||| ||| | || || | || || ||||| ||||| || Sbjct 7074 CCTGATCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 7117 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| |||||| | | Sbjct 7191 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTCGAGTCGTCC 7250 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| || ||||| ||||| || || || || ||||| || Sbjct 7251 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 7310 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| || | | | | | | ||| || ||| Sbjct 7311 CAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 7370 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 7371 ATCCAGAAGGAGTCGAC 7387 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| |||||| | | Sbjct 7419 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTCGAGAGCTCC 7478 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| || ||||| ||||| || || || |||||||| || Sbjct 7479 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 7538 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | | |||||||| ||||| || Sbjct 7539 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGA 7573 >seq2743 Length=127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| ||| |||||| |||||| | ||||| ||||||||| ||| Sbjct 105 ATCACCCTCGAGGTCGAGTCCAGCGACACGATCGAGAACGTCAAGCAAAAGATTCAGGAC 46 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGAT 24121 || || ||||| ||||||||||| ||| | || || Sbjct 45 AAGGAGGGCATCCCTCCCGATCAGCAGCGCCTCAT 11 >seq52280 Length=2070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | || ||| |||| || ||| | | Sbjct 1668 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCGAG 1727 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || || ||||| ||||| || || || || ||||| || Sbjct 1728 CGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCA 1787 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | || ||| || || Sbjct 1788 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCGCCGACTACAA 1847 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || || || || |||| Sbjct 1848 CATCCAGAAGGAGTCGACTCTTCA 1871 >seq5343 Length=175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| ||| |||| |||||| | ||||||||||||| | || || || ||||| | Sbjct 155 CGATCACCCTCGAGGTCGAGAGCTCCGACACCATCGAGAACGTGAAGCAGAAGATCCAGG 96 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || || || |||||||| || ||| | || || | || |||||||| ||||| | Sbjct 95 ACAAGGAGGGTATTCCTCCCGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGG 36 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 | | | | | | || ||| || ||||| || || Sbjct 35 ACGGCCGTACCCTCGCCGACTACAACATCCAGAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429619041775950