Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq58743 118 7e-22 seq12471 105 4e-18 seq59629 102 5e-17 seq57112 95.1 8e-15 seq60261 93.3 3e-14 seq60216 91.5 1e-13 seq43031 87.8 1e-12 seq49253 84.2 1e-11 >seq58743 Length=2429 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || ||||| || Sbjct 1643 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTTGT 1702 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 1703 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 1737 >seq12471 Length=140 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 93 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 34 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 33 GCTGACAATATTTAGCCTT 15 >seq59629 Length=15804 Score = 102 bits (112), Expect = 5e-17 Identities = 71/81 (88%), Gaps = 5/81 (6%) Strand=Plus/Minus Query 25916 GGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGC 25970 ||||||||||||||| | | |||||||||| || |||||||||||||| ||||||| Sbjct 280 GGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 221 Query 25971 GCGTCACTAATTAGATGACGA 25991 ||||||||||||||||||||| Sbjct 220 GCGTCACTAATTAGATGACGA 200 >seq57112 Length=517 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 5/77 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 441 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 500 Query 25957 TAATCCTTTCATGCGCG 25973 |||||| |||||||||| Sbjct 501 TAATCCATTCATGCGCG 517 >seq60261 Length=7311 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| |||||| || || ||||| || | || | || |||| || | || Sbjct 1228 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGC 1287 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || || || || || |||| |||| ||| || |||||| || ||| Sbjct 1288 TTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTT 1347 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| || || || || || || || | ||||| || || || ||| Sbjct 1348 TGCTTCACGTTCTCGATTGTGTCCGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTC 1407 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | || || ||||| ||||||||| Sbjct 1408 AGCGTCTTGACGAAGATCTGCATG 1431 >seq60216 Length=3196 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| |||||| || || ||||| || | || || |||| || | || Sbjct 940 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 999 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || |||||||| || ||||| || || || | ||||| ||| || |||||| ||| ||| Sbjct 1000 TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTT 1059 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| || || || || || || || | || || || || || ||| Sbjct 1060 TGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTC 1119 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| |||||||| Sbjct 1120 AGCGTCTTGACGAAGATCTGCAT 1142 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231 || || ||||| || || ||||| || || |||| |||| ||| || |||||| || Sbjct 1679 TGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATC 1738 Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291 ||||||||||| |||| || ||| || || || || || | || || || ||||| Sbjct 1739 TTTTGCTTCACGTTCTCGATAGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTACCG 1798 Query 38292 GTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || |||||||| ||||||||| Sbjct 1799 GTCAGCGTCTTCACGAAGATCTGCATG 1825 >seq43031 Length=7181 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || ||||| |||||| || |||||||| || | | || |||| || | || Sbjct 13 TGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 72 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || ||||| || ||||||| |||| ||| || |||||| ||| ||| Sbjct 73 TTGCCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTT 132 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| || || || | || || || | || || || || || || Sbjct 133 TGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 192 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| |||||||| |||||||| Sbjct 193 AGGGTCTTCACGAAGATCTGCAT 215 >seq49253 Length=1508 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| ||||||||| || ||||| || | || || |||| || | || Sbjct 1342 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1283 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || ||||| || ||||| | ||| | || || |||||| || ||| Sbjct 1282 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTT 1223 Query 38235 TGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 |||||||| |||| || || || | || || || || | || || || || || | Sbjct 1222 TGCTTCACGTTCTCGATCGTGTCGGACGAC--TCGACCTCGAGGGTGATGGTCTTGCCGG 1165 Query 38293 TCAAGGTTTTCACGAATATCTGCATGTTT 38321 | | ||| |||||||| ||||||||| || Sbjct 1164 TGAGGGTCTTCACGAAGATCTGCATGGTT 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334700269597190