Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq57096 140 4e-28 seq41485 140 4e-28 seq41484 140 4e-28 >seq57096 Length=4203 Score = 140 bits (154), Expect = 4e-28 Identities = 374/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 3625 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3684 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||||||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 3685 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3743 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || ||| || | Sbjct 3744 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 3803 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 3804 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3863 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 3864 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 3923 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 3924 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3983 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 3984 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 4043 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || ||||| || || || || || | | ||||| | |||| || | || Sbjct 4044 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 4102 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 4103 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 4161 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 4162 TTCTTGTACATCTCCCAGATG 4182 >seq41485 Length=1387 Score = 140 bits (154), Expect = 4e-28 Identities = 374/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 579 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 520 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||||||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 519 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 461 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || ||| || | Sbjct 460 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 401 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 400 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 341 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 340 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 281 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 280 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 221 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 220 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 161 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || ||||| || || || || || | | ||||| | |||| || | || Sbjct 160 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 102 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 101 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 43 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 42 TTCTTGTACATCTCCCAGATG 22 >seq41484 Length=9505 Score = 140 bits (154), Expect = 4e-28 Identities = 374/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 355 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 414 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||||||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 415 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 473 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || ||| || | Sbjct 474 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 533 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 534 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 593 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 594 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 653 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 654 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 713 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 714 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 773 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || ||||| || || || || || | | ||||| | |||| || | || Sbjct 774 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 832 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 833 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 891 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 892 TTCTTGTACATCTCCCAGATG 912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633152895004000