Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq52280 114 1e-20 seq58772 109 5e-19 seq41697 107 2e-18 seq60216 105 6e-18 >seq52280 Length=2070 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || |||| || |||| || ||||||||| Sbjct 1897 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 1956 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||||| || ||| ||||| ||||| || || || ||||| Sbjct 1957 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 2016 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| |||| || |||||||| || | || || | |||||| ||| ||| Sbjct 2017 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGA 2069 >seq58772 Length=3437 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || |||| || |||| || ||| || Sbjct 2079 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGAGCTCC 2138 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| ||||||| || ||| ||||| || || || || || || || Sbjct 2139 GACACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 2198 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | |||||| ||| ||| ||||| Sbjct 2199 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTGGCCGACTACAAC 2258 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || |||||||| || Sbjct 2259 ATCCAGAAGGAGTCCACGCTCCA 2281 >seq41697 Length=921 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||||||| || || || ||||| | ||||| || ||||||| |||| || ||||| Sbjct 232 AACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTC 173 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| ||||||| || || ||||| || || || || || || Sbjct 172 CAGCGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGA 113 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | || || | ||||| ||| ||| || Sbjct 112 CCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTA 53 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || ||||| || || Sbjct 52 CAACATCCAGAAGGAGTCCACTCTCCA 26 >seq60216 Length=3196 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| |||| || ||| || Sbjct 1142 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACCCTCGAGGTCGAGAGCTCG 1083 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||||||||| || ||||| || || || || || ||||| Sbjct 1082 GACACGATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 1023 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| ||| ||| ||||| Sbjct 1022 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 963 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 962 ATCCAGAAGGAGTCCACCCTCCA 940 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| | || || || ||||||| |||| || ||||| Sbjct 2056 AACAATGCAAATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTC 1997 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||| |||||| ||||||| || ||| ||||| || || || || ||||| Sbjct 1996 GTCGGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 1937 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || |||||||| || | || || | || || | | || || Sbjct 1936 TCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCGGACTA 1877 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || || Sbjct 1876 CAACATCCAGAAGGAGTCGACTCTCCA 1850 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||||| ||||||| |||| || ||| || Sbjct 1824 ATGCAGATCTTCGTGAAGACGCTGACCGGTAAGACCATCACCCTCGAGGTCGAGAGCTCG 1765 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| |||||||||| ||| ||||| || || || || || ||||| Sbjct 1764 GACACTATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1705 Query 25119 CAGCGGATTATTTTTGCCGGCAAACA 25144 ||||| | || || |||||||| || Sbjct 1704 CAGCGCCTCATCTTCGCCGGCAAGCA 1679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433008541119350