Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq51907 82.4 8e-11 seq50290 82.4 8e-11 seq50289 82.4 8e-11 seq46138 82.4 8e-11 >seq51907 Length=4977 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||| |||||||||||||||| | ||||| ||| | ||||| | Sbjct 2447 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2506 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| ||| ||| | | | ||||| | ||| ||| | |||||||||||| Sbjct 2507 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 2566 Query 127664 GACCTGGGCAACGTGGAGGC 127683 || || |||||||| | ||| Sbjct 2567 GATCTCGGCAACGTCGTGGC 2586 >seq50290 Length=5021 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||| |||||||||||||||| | ||||| ||| | ||||| | Sbjct 2531 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2472 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| ||| ||| | | | ||||| | ||| ||| | |||||||||||| Sbjct 2471 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 2412 Query 127664 GACCTGGGCAACGTGGAGGC 127683 || || |||||||| | ||| Sbjct 2411 GATCTCGGCAACGTCGTGGC 2392 >seq50289 Length=3841 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||| |||||||||||||||| | ||||| ||| | ||||| | Sbjct 911 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 970 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| ||| ||| | | | ||||| | ||| ||| | |||||||||||| Sbjct 971 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 1030 Query 127664 GACCTGGGCAACGTGGAGGC 127683 || || |||||||| | ||| Sbjct 1031 GATCTCGGCAACGTCGTGGC 1050 >seq46138 Length=3865 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||| |||||||||||||||| | ||||| ||| | ||||| | Sbjct 2955 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2896 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| ||| ||| | | | ||||| | ||| ||| | |||||||||||| Sbjct 2895 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 2836 Query 127664 GACCTGGGCAACGTGGAGGC 127683 || || |||||||| | ||| Sbjct 2835 GATCTCGGCAACGTCGTGGC 2816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537196704780400