Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq41484 123 3e-23 seq57096 120 3e-22 seq41485 120 3e-22 >seq41484 Length=9505 Score = 123 bits (136), Expect = 3e-23 Identities = 383/585 (65%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 391 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGA-T 449 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 450 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 509 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 510 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 569 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 570 GACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 629 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 630 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 689 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 690 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 749 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 750 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 809 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 810 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 866 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 867 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 926 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 927 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 971 >seq57096 Length=4203 Score = 120 bits (132), Expect = 3e-22 Identities = 347/526 (66%), Gaps = 11/526 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 3661 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGA-T 3719 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 3720 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 3779 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 3780 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 3839 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 3840 GACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 3899 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 3900 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 3959 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 3960 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 4019 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 4020 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 4079 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 4080 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 4136 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 | | ||||| || || || || || || |||||||| ||||| ||| Sbjct 4137 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 4182 >seq41485 Length=1387 Score = 120 bits (132), Expect = 3e-22 Identities = 347/526 (66%), Gaps = 11/526 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 543 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGA-T 485 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 484 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 425 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 424 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 365 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 364 GACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 305 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 304 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 245 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 244 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 185 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 184 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 125 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 124 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 68 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 | | ||||| || || || || || || |||||||| ||||| ||| Sbjct 67 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556439743627600