Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq56944 122 7e-23 seq53109 116 3e-21 seq58772 107 2e-18 seq60261 105 6e-18 seq52280 100 2e-16 seq60216 98.7 8e-16 seq17665 96.9 3e-15 seq56991 93.3 4e-14 seq54650 87.8 2e-12 seq40269 87.8 2e-12 seq2743 86.0 5e-12 seq40434 84.2 2e-11 >seq56944 Length=8418 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | | ||| | || | || || || || || |||||||| ||| Sbjct 7192 ATGCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 7133 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || || ||||||||| ||||||| ||||| || || || Sbjct 7132 GCCAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGGG 7073 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| || || | | || | |||||||| || ||| Sbjct 7072 GGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCG 7013 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||||||||| || || || || |||||||| Sbjct 7012 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 6963 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||||| || || || || ||||| Sbjct 7387 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCG 7328 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 7327 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTG 7268 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| || ||||| || | ||| | ||| || |||||||| || Sbjct 7267 ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCGGTCAGGGTC 7208 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 7207 TTGACGAAGATCTGCATG 7190 >seq53109 Length=5902 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| ||| || || || ||||| Sbjct 4433 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCGAGCTGCTTACCG 4374 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| || || ||||| ||||| || ||||| ||||| || ||| Sbjct 4373 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTT 4314 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| | || || || || | ||| | ||| ||||||||||| || Sbjct 4313 ACGTTCTCGATGGTGTCGCTCGACTCTACCTCGAGGGTGATCGTCTTGCCGGTCAGGGTC 4254 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 4253 TTGACGAAGATCTGCAT 4237 >seq58772 Length=3437 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| ||| || || ||| || ||||| || || || Sbjct 2276 CGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTCAAGCTGCTTGCC 2217 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||||||||| || || ||||| ||||| || ||||| ||||| || || Sbjct 2216 GGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 2157 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||||| | ||||| || | ||| | || ||||||||||| || Sbjct 2156 CACGTTCTCGATAGTGTCGGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGT 2097 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 2096 CTTGACGAAGATCTGCATG 2078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | | || | || | ||| || || || || |||||||| ||| Sbjct 1852 ATGCCGCCACGAAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCG 1793 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || ||||| || || || ||| ||||||| ||||| || || || Sbjct 1792 GCGAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGG 1733 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || || | | || | || ||| | || ||| Sbjct 1732 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATAGTATCGCTCGACTCG 1673 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||||||||| || || || || |||||||| Sbjct 1672 ACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1623 >seq60261 Length=7311 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | | ||| | || | || || || || || |||||||| ||| Sbjct 1201 ATGCCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1260 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || || || || || || || ||| ||||||||||||| ||||| ||| Sbjct 1261 GCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGA 1320 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||||| || | | || | ||||| | | ||| Sbjct 1321 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATTGTGTCCGAGCTCTCG 1380 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||||||||| || || || || ||||||||| Sbjct 1381 ACCTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 1431 >seq52280 Length=2070 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || |||||||| ||| Sbjct 1898 ATACCGCCACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCG 1839 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || || || || || || ||| ||||||||||||| ||||| || Sbjct 1838 GCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGG 1779 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || || | | || | ||||||| | || || Sbjct 1778 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTCGACTCA 1719 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || || || |||||||| Sbjct 1718 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1669 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| |||| || ||||| ||||| ||||| |||||||| ||| Sbjct 2051 TCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 1992 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | || | ||||| | || ||||| || | || | Sbjct 1991 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCAGACGACTCGACCTCGAGAGTAATG 1932 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||||||||| || || || || |||||||| Sbjct 1931 GTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 1897 >seq60216 Length=3196 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || || || || || || || Sbjct 946 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1005 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| |||||||| || ||||| || ||||| ||||||||| || Sbjct 1006 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 1065 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | ||||| || | ||| | ||| ||||||||||| || Sbjct 1066 ACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTCAGCGTC 1125 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1126 TTGACGAAGATCTGCAT 1142 >seq17665 Length=187 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || || |||||||| ||| | ||||| || || || || || |||||| ||||| Sbjct 2 TTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATG 61 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 |||||||| |||||||| || ||||| || ||||| ||||| || || | | ||| Sbjct 62 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTTTCG 121 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||||| | | ||||| || | ||| | || ||||||||||| || || || || Sbjct 122 ATCGTGTCCGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAG 181 Query 114375 ATCTGC 114380 |||||| Sbjct 182 ATCTGC 187 >seq56991 Length=1928 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| || || |||||| || || || || || || Sbjct 896 CGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGACCGTCCTCGAGCTGCTTGCC 955 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| ||||| || || || || ||||| || ||||| ||||| || || Sbjct 956 GGCGAAGATGAGGCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 1015 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| | | ||||| || | ||| | || ||||||||||| || Sbjct 1016 CACGTTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGT 1075 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 1076 CTTCACGAAGATCTGCATG 1094 >seq54650 Length=1408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 1404 ATACCACCACGGAGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 1345 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || ||| ||||||||||||| ||||| || Sbjct 1344 GCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGG 1285 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || || | | || | ||||||| | || || Sbjct 1284 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTCGACTCA 1225 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| ||||| || || || || || |||||| Sbjct 1224 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 1174 >seq40269 Length=983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| || | || ||| || || || || || || Sbjct 184 CGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCC 125 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| ||||| |||||||| || ||||| || ||||| ||||| || || Sbjct 124 GGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 65 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| |||| ||||| || | ||| | || ||||||||||| || Sbjct 64 CACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGT 5 Query 114365 TTT 114367 || Sbjct 4 CTT 2 >seq2743 Length=127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 114243 CCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGT 114302 |||||| ||||||| ||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 2 CCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGC 61 Query 114303 TTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362 || | | || | |||||| |||| ||||| || | ||| | || ||||||||||| Sbjct 62 TTGACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGC 121 Query 114363 GTTTT 114367 || || Sbjct 122 GTCTT 126 >seq40434 Length=1363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||||||||| ||||| || || ||||| || ||| Sbjct 23 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 82 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | || | ||||||| | || || || || | ||| | Sbjct 83 TCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATG 142 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| ||||| || || || || || |||||| Sbjct 143 GTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419824667729880