Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq57096 131 4e-25 seq41485 131 4e-25 seq41484 131 4e-25 seq53831 122 2e-22 >seq57096 Length=4203 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 4202 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 4143 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 4142 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 4086 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 4085 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 4027 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 4026 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 3968 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 3967 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 3908 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 3907 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 3852 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || |||| | || ||||| | ||||| ||||||| | || || Sbjct 3851 GTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 3792 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 3791 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 3732 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 3731 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGT 3672 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 3671 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 3612 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 3611 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 3556 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | || |||| | ||| || || ||||||||| Sbjct 3555 CGAGATTGAGAAGGAATTCGTGACGGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 3498 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 3497 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 3438 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 3437 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 3378 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 3377 GGCAAGACCAACTTCTTCGAA 3357 >seq41485 Length=1387 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 2 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 61 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 62 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 118 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 119 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 177 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 178 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 236 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 237 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 296 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 297 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 352 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || |||| | || ||||| | ||||| ||||||| | || || Sbjct 353 GTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 412 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 413 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 472 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 473 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGT 532 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 533 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 592 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 593 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 648 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | || |||| | ||| || || ||||||||| Sbjct 649 CGAGATTGAGAAGGAATTCGTGACGGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 706 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 707 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 766 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 767 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 826 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 827 GGCAAGACCAACTTCTTCGAA 847 >seq41484 Length=9505 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 932 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 873 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 872 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 816 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 815 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 757 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 756 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 698 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 697 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 638 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 637 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 582 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || |||| | || ||||| | ||||| ||||||| | || || Sbjct 581 GTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 522 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 521 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 462 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 461 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGT 402 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 401 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 342 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 341 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 286 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | || |||| | ||| || || ||||||||| Sbjct 285 CGAGATTGAGAAGGAATTCGTGACGGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 228 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 227 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 168 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 167 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 108 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 107 GGCAAGACCAACTTCTTCGAA 87 >seq53831 Length=10026 Score = 122 bits (134), Expect = 2e-22 Identities = 291/435 (67%), Gaps = 14/435 (3%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| ||||| ||||||| | | ||| || || || | || || || ||| Sbjct 5743 TTTGCCGAGCGCCTCGTCGGATTCGCCACCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 5802 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 || ||||||| ||||| ||| ||| | ||||| ||||||| | || |||||| Sbjct 5803 TGTTCCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAG 5862 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||||| ||||||||||||| ||| | |||| | || |||| | |||| Sbjct 5863 CTCATCAGCGGCGACGAGGGCCTGCACGCAGAGTTTGCCTGCCTCCTGTACAGTATGCTC 5922 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAA-CAAATCATCACAGAAGCAGTTGAAAACG 243526 |||||||| | ||| || | |||| || ||| || || || || || | || Sbjct 5923 GTGAACAAGCCGTCGAGCGA--CGTGCCAAAGCAGATCGTCCTCGAGGCCGTCGAGATCG 5980 Query 243527 AAAAGGAATTCATTTGCGACGCTATTCCATGCCGG-----CTTATTGGCATGAACTCTGA 243581 | ||||| || || ||| | || | |||| || || ||||||||| | | Sbjct 5981 AGAAGGAGTT----TGTCACGG-AGTCGCTCCCGGTGGCGCTCATCGGCATGAACGCGGG 6035 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 |||| | | ||||||||||| || || |||||||| | || | ||||| || | || Sbjct 6036 CCTCACGTGCCAGTACATCGAGTTTGTCGCCGACCGTCTGCTCGTGGCGCTCGGGTGCGA 6095 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| |||||| ||| |||||||| ||| |||||||| || || || | || || Sbjct 6096 CAAACACTACAACGCCACCAACCCCTTCCCCTGGATGGAGCTGATCTCACTCGAGGGCAA 6155 Query 243702 AACTAACTTCTTCGA 243716 || ||||||||||| Sbjct 6156 GACCAACTTCTTCGA 6170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102025236981500