Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq57096 203 5e-47 seq41485 203 5e-47 seq41484 203 5e-47 seq58066 185 1e-41 seq53831 127 3e-24 >seq57096 Length=4203 Score = 203 bits (224), Expect = 5e-47 Identities = 552/837 (66%), Gaps = 21/837 (3%) Strand=Plus/Plus Query 159653 TCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTC 159712 ||||| ||||||||||||||||| | ||| || ||||| || ||| ||||| || Sbjct 3358 TCGAAGAAGTTGGTCTTGCCCTCGAGGGAGATGAGCTCCATCCACGGGAACGGGTTGGTC 3417 Query 159713 ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATG 159772 || ||| |||| | ||||| || || || | | ||| || || || |||||| Sbjct 3418 TGGTTGTAGTGCTTGTCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCGACGAACTCGATG 3477 Query 159773 TAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGA 159832 || ||||| | || ||| || || | || |||||||||| |||| || Sbjct 3478 TACTGGCACATGAGGTCGGCGTTCATGCCGATGAGGGCCACGGGGAGCGACTCCGTCACG 3537 Query 159833 AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGC--GAGACACGTTCGTACCCCG 159890 || ||||||||||||||||| || ||| | |||||| | || |||| || | | Sbjct 3538 AATTCCTTCTCAATCTCGACGGCCTCGAGGATGATCTGCTTGGGA-ACGTCGGT-CGAGG 3595 Query 159891 GCTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||||| | | ||| || | |||||||| || ||||||||||| || |||| Sbjct 3596 GCTTGTTGACGAGCATGGTGT------AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCT 3649 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 | || || ||| | |||||| | | |||||| ||||||| |||||| |||| Sbjct 3650 CATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCACGCTTCTTGA 3709 Query 160008 GCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| |||| ||| || ||||| ||||| ||||| || || | Sbjct 3710 GCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCG 3768 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTC---ATGGGTCCACCTTTTGGCCCATTCA 160123 ||||| | ||| | || | || | || | | ||||| | | ||||| || Sbjct 3769 ACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCG 3828 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 |||||||| || | |||| | ||||| |||| || | | ||||| ||| | Sbjct 3829 GCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACC 3888 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 ||||||| || | || || ||||||||| || | ||| | || |||||| Sbjct 3889 GAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATG 3948 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTT 160303 || || |||||| |||||| | |||||| | ||||||||||| |||| | Sbjct 3949 GCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGG 4008 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | ||||| | || | |||||| ||||| ||||| ||||| ||||| | Sbjct 4009 CCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTG 4068 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 ||||| || |||||||| |||||||| | ||||||||| ||| ||| | || | Sbjct 4069 ATGAAGTGCCTCTCGTCGTTGTTGAG---CGATTCCCAGTGCTTCATGTCGGAGCTCAGA 4125 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 || || || || || |||| || |||| || | |||||||| |||||||| Sbjct 4126 TCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 4182 >seq41485 Length=1387 Score = 203 bits (224), Expect = 5e-47 Identities = 552/837 (66%), Gaps = 21/837 (3%) Strand=Plus/Minus Query 159653 TCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTC 159712 ||||| ||||||||||||||||| | ||| || ||||| || ||| ||||| || Sbjct 846 TCGAAGAAGTTGGTCTTGCCCTCGAGGGAGATGAGCTCCATCCACGGGAACGGGTTGGTC 787 Query 159713 ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATG 159772 || ||| |||| | ||||| || || || | | ||| || || || |||||| Sbjct 786 TGGTTGTAGTGCTTGTCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCGACGAACTCGATG 727 Query 159773 TAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGA 159832 || ||||| | || ||| || || | || |||||||||| |||| || Sbjct 726 TACTGGCACATGAGGTCGGCGTTCATGCCGATGAGGGCCACGGGGAGCGACTCCGTCACG 667 Query 159833 AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGC--GAGACACGTTCGTACCCCG 159890 || ||||||||||||||||| || ||| | |||||| | || |||| || | | Sbjct 666 AATTCCTTCTCAATCTCGACGGCCTCGAGGATGATCTGCTTGGGA-ACGTCGGT-CGAGG 609 Query 159891 GCTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||||| | | ||| || | |||||||| || ||||||||||| || |||| Sbjct 608 GCTTGTTGACGAGCATGGTGT------AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCT 555 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 | || || ||| | |||||| | | |||||| ||||||| |||||| |||| Sbjct 554 CATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCACGCTTCTTGA 495 Query 160008 GCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| |||| ||| || ||||| ||||| ||||| || || | Sbjct 494 GCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCG 436 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTC---ATGGGTCCACCTTTTGGCCCATTCA 160123 ||||| | ||| | || | || | || | | ||||| | | ||||| || Sbjct 435 ACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCG 376 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 |||||||| || | |||| | ||||| |||| || | | ||||| ||| | Sbjct 375 GCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACC 316 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 ||||||| || | || || ||||||||| || | ||| | || |||||| Sbjct 315 GAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATG 256 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTT 160303 || || |||||| |||||| | |||||| | ||||||||||| |||| | Sbjct 255 GCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGG 196 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | ||||| | || | |||||| ||||| ||||| ||||| ||||| | Sbjct 195 CCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTG 136 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 ||||| || |||||||| |||||||| | ||||||||| ||| ||| | || | Sbjct 135 ATGAAGTGCCTCTCGTCGTTGTTGAG---CGATTCCCAGTGCTTCATGTCGGAGCTCAGA 79 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 || || || || || |||| || |||| || | |||||||| |||||||| Sbjct 78 TCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 22 >seq41484 Length=9505 Score = 203 bits (224), Expect = 5e-47 Identities = 552/837 (66%), Gaps = 21/837 (3%) Strand=Plus/Plus Query 159653 TCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTC 159712 ||||| ||||||||||||||||| | ||| || ||||| || ||| ||||| || Sbjct 88 TCGAAGAAGTTGGTCTTGCCCTCGAGGGAGATGAGCTCCATCCACGGGAACGGGTTGGTC 147 Query 159713 ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATG 159772 || ||| |||| | ||||| || || || | | ||| || || || |||||| Sbjct 148 TGGTTGTAGTGCTTGTCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCGACGAACTCGATG 207 Query 159773 TAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGA 159832 || ||||| | || ||| || || | || |||||||||| |||| || Sbjct 208 TACTGGCACATGAGGTCGGCGTTCATGCCGATGAGGGCCACGGGGAGCGACTCCGTCACG 267 Query 159833 AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGC--GAGACACGTTCGTACCCCG 159890 || ||||||||||||||||| || ||| | |||||| | || |||| || | | Sbjct 268 AATTCCTTCTCAATCTCGACGGCCTCGAGGATGATCTGCTTGGGA-ACGTCGGT-CGAGG 325 Query 159891 GCTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||||| | | ||| || | |||||||| || ||||||||||| || |||| Sbjct 326 GCTTGTTGACGAGCATGGTGT------AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCT 379 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 | || || ||| | |||||| | | |||||| ||||||| |||||| |||| Sbjct 380 CATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCACGCTTCTTGA 439 Query 160008 GCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| |||| ||| || ||||| ||||| ||||| || || | Sbjct 440 GCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCG 498 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTC---ATGGGTCCACCTTTTGGCCCATTCA 160123 ||||| | ||| | || | || | || | | ||||| | | ||||| || Sbjct 499 ACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCG 558 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 |||||||| || | |||| | ||||| |||| || | | ||||| ||| | Sbjct 559 GCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACC 618 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 ||||||| || | || || ||||||||| || | ||| | || |||||| Sbjct 619 GAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATG 678 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTT 160303 || || |||||| |||||| | |||||| | ||||||||||| |||| | Sbjct 679 GCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGG 738 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | ||||| | || | |||||| ||||| ||||| ||||| ||||| | Sbjct 739 CCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTG 798 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 ||||| || |||||||| |||||||| | ||||||||| ||| ||| | || | Sbjct 799 ATGAAGTGCCTCTCGTCGTTGTTGAG---CGATTCCCAGTGCTTCATGTCGGAGCTCAGA 855 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 || || || || || |||| || |||| || | |||||||| |||||||| Sbjct 856 TCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 912 >seq58066 Length=10012 Score = 185 bits (204), Expect = 1e-41 Identities = 523/779 (67%), Gaps = 26/779 (3%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || |||||||| || ||||| |||| |||| | | | || ||||||||||||||| Sbjct 5497 TCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGTC 5556 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGTC 203961 || |||||||| |||| |||| | |||||| || | || || || ||| ||| || Sbjct 5557 TTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACG-AGGGCTC 5615 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | |||||| | ||| || |||||||| ||||||||| | | || ||||| |||||||| Sbjct 5616 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATCGGCGGCCAT 5675 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGT-GT 204079 | ||| ||| ||||| | ||||||||| |||||| ||| | ||| || ||| || Sbjct 5676 GTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCT-TGATGTCGT 5734 Query 204080 TGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 | || |||| | | | | || || ||||||||||| | | || | || | Sbjct 5735 CGGGG---ATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGAGACGAGCTTGTTCTTGA 5791 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGAT-CAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | | ||| | | || ||| | ||||| |||| ||||| ||||| || Sbjct 5792 GCGCGGGCGACCAGA-GGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGACGACG 5850 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 ||||| |||| || | | |||||| | | |||| | ||| | || || || | Sbjct 5851 GTGAAGTCGCCGGCGAGGATACGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCAC 5910 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| | ||||| | ||| ||||||||||||||| |||| ||| || ||| Sbjct 5911 TCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAG 5970 Query 204317 TTGCGCACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||||| ||||| | || | |||| || | || |||||| | | | Sbjct 5971 TTGCGCAGACCGTGCTGGGCGATGTTGGCGC-GGAGCGTGGCCCAGTCCCACCTGTCCGA 6029 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATG-CCTTGACTGAC-TGGGC-TGCCCTT 204432 || |||||||| | |||| ||| | || ||||| ||| |||| ||||| Sbjct 6030 CGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTG---GACGCGGGCGAGCCCTC 6086 Query 204433 GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATA 204492 ||| ||| | || | || | | || |||| | ||||||| ||| |||| || Sbjct 6087 GTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGGCGTA 6146 Query 204493 GTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCGTCAAACGC 204549 ||| |||||||| ||||| | || || | || || |||||| || || || ||| Sbjct 6147 GTAGATGGTCTCGAAGAT-GGCGCGGTTGAGCTCGCGGGCCTCGTCGCTC--TCCCACGG 6203 Query 204550 CAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 | | || || || ||||| |||| ||||||||||||||| || | || |||| Sbjct 6204 GTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGT 6262 >seq53831 Length=10026 Score = 127 bits (140), Expect = 3e-24 Identities = 166/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCA--GGCCT-GCTTCTCAGATAGTACA 203894 |||| ||||| |||| |||| ||| | ||| ||||| | | | || ||||||| Sbjct 8710 TCTTCTCCACAGTGACCTGATCGGCCTG---GGCCTTGGCCTTGGTGCGGAGGTAGTACA 8766 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGT 203954 |||||||||| || | ||| ||||| | || | ||||||||| | || ||| | | Sbjct 8767 TGCCGGTCTTGAGACTCTTGCGCCACGCTTAGAAGTGCATGGACGTGAGCTTGGGGAAGG 8826 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014 ||||||||||||||| | ||| || |||||||| ||||||||| | | || || || | Sbjct 8827 TGGGGTCGGCCATGTAGAGGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGGTCGG 8886 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||||| | ||| ||| |||||| ||||||||||| |||||| Sbjct 8887 CGGCCAGGTCGATGATGACGCGCTGCGAGATCTCCCACACAGTCTTG 8933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794553963274400