Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq58999 104 2e-16 seq59560 95.1 9e-14 seq41130 95.1 9e-14 seq55881 93.3 3e-13 seq48312 93.3 3e-13 seq39241 93.3 3e-13 seq58517 89.7 4e-12 seq52479 89.7 4e-12 seq45031 89.7 4e-12 seq45030 89.7 4e-12 seq57051 87.8 1e-11 >seq58999 Length=9553 Score = 104 bits (114), Expect = 2e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 1078766 GATTATTCATCGTGACATTAAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAA 1078825 |||||||||||| || | ||||| || ||| | || | ||||| || ||||| || || Sbjct 5720 GATTATTCATCGCGATCTCAAGCCGTCCAATCTGCTGGTGGATGAGAACTGGAACGTGAA 5779 Query 1078826 AATTGCCGATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGG 1078885 | |||||||| || || || |||||||| || ||||| |||| |||||| || ||||| Sbjct 5780 GGTAGCCGATTTCGGGTTCGCGCGCATCAAGGAGGAGAATGCCACCATGACCCGCTGTGG 5839 Query 1078886 TACTCCTTGTTGGACTGCTCCTGAAAT 1078912 || || || ||||| || || || || Sbjct 5840 CACGCCCTGCTGGACCGCACCCGAGAT 5866 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 1065101 CCAATTATTATTCATCGTGACATTAAACCATCCAATATTCTAGTTGATGATAGTATGAAT 1065160 || || ||||||||||| || | || || |||||| | || || ||||| | ||| Sbjct 5715 CCGATGATTATTCATCGCGATCTCAAGCCGTCCAATCTGCTGGTGGATGAGAACTGGAAC 5774 Query 1065161 GTGAAAATTGCTGATTTTGGATTTGCACGTATCAAAGAGGAAAATTCCGTAATGACACGT 1065220 ||||| | || ||||| || || || || ||||| ||||| ||| || ||||| || Sbjct 5775 GTGAAGGTAGCCGATTTCGGGTTCGCGCGCATCAAGGAGGAGAATGCCACCATGACCCGC 5834 Query 1065221 TGTGGAACTCCTTGTTGGACTGCTCCTGAAATTATTCGTGGAGAAAAATATACAGAGAAA 1065280 ||||| || || || ||||| || || || || | || || || || || | ||| Sbjct 5835 TGTGGCACGCCCTGCTGGACCGCACCCGAGATACTCCGCGGCGAGAAGTACTCTGAGTCC 5894 Query 1065281 GTAGATGTATTCTCTTTTGGAATTGTTATGTGGGAAGT 1065318 | ||| || | ||| || || || | |||||||| || Sbjct 5895 GCAGACGTTTACTCGTTCGGCATCATCATGTGGGAGGT 5932 >seq59560 Length=3351 Score = 95.1 bits (104), Expect = 9e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 1078809 GAAAATTGGAATGTCAAAATTGCCGATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCC 1078868 || || ||||| || || | ||||| |||||||| || |||||||| || |||||||| Sbjct 3350 GAGAACTGGAACGTGAAGGTGGCCGACTTTGGATTCGCGCGCATCAAGGAGGAGAACGCG 3291 Query 1078869 ATCATGACTCGTTGTGGTACTCCTTGTTGGACTGCTCCTGAAATTATTCGTAATGATATC 1078928 | ||||| || ||||| || || || ||||| || || || | || || || | Sbjct 3290 ACGATGACCCGCTGTGGCACCCCCTGCTGGACGGCACCGGAGGTCATCCGCGGCGAGAAG 3231 Query 1078929 TATGACGAAAAGGTCGATGTATTTTCTTTTGGAATTGTTATGTGGGAAGT 1078978 || |||||||||| ||| || | || || || || | ||||||||||| Sbjct 3230 TACGACGAAAAGGCCGACGTGTACTCGTTCGGCATCATCATGTGGGAAGT 3181 >seq41130 Length=1930 Score = 95.1 bits (104), Expect = 9e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 1078809 GAAAATTGGAATGTCAAAATTGCCGATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCC 1078868 || || ||||| || || | ||||| |||||||| || |||||||| || |||||||| Sbjct 1929 GAGAACTGGAACGTGAAGGTGGCCGACTTTGGATTCGCGCGCATCAAGGAGGAGAACGCG 1870 Query 1078869 ATCATGACTCGTTGTGGTACTCCTTGTTGGACTGCTCCTGAAATTATTCGTAATGATATC 1078928 | ||||| || ||||| || || || ||||| || || || | || || || | Sbjct 1869 ACGATGACCCGCTGTGGCACCCCCTGCTGGACGGCACCGGAGGTCATCCGCGGCGAGAAG 1810 Query 1078929 TATGACGAAAAGGTCGATGTATTTTCTTTTGGAATTGTTATGTGGGAAGT 1078978 || |||||||||| ||| || | || || || || | ||||||||||| Sbjct 1809 TACGACGAAAAGGCCGACGTGTACTCGTTCGGCATCATCATGTGGGAAGT 1760 >seq55881 Length=4451 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1078785 AAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCCGATTTTGGATTT 1078844 ||||| || ||| | ||| |||| ||||| ||||| || || | ||||| || || || Sbjct 1585 AAGCCCTCCAATCTGCTCGTCGACGAAAACTGGAACGTGAAGGTGGCCGACTTCGGGTTC 1644 Query 1078845 GCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCTTGTTGGAC 1078900 || |||||||| ||||||||||||| |||||| || || || || || || ||||| Sbjct 1645 GCGCGCATCAAGGAAGAGAACGCCACCATGACCCGCTGCGGCACCCCCTGCTGGAC 1700 >seq48312 Length=9218 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1078785 AAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCCGATTTTGGATTT 1078844 ||||| || ||| | ||| |||| ||||| ||||| || || | ||||| || || || Sbjct 7989 AAGCCCTCCAATCTGCTCGTCGACGAAAACTGGAACGTGAAGGTGGCCGACTTCGGGTTC 7930 Query 1078845 GCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCTTGTTGGAC 1078900 || |||||||| ||||||||||||| |||||| || || || || || || ||||| Sbjct 7929 GCGCGCATCAAGGAAGAGAACGCCACCATGACCCGCTGCGGCACCCCCTGCTGGAC 7874 >seq39241 Length=4859 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1078785 AAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCCGATTTTGGATTT 1078844 ||||| || ||| | ||| |||| ||||| ||||| || || | ||||| || || || Sbjct 3630 AAGCCCTCCAATCTGCTCGTCGACGAAAACTGGAACGTGAAGGTGGCCGACTTCGGGTTC 3571 Query 1078845 GCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCTTGTTGGAC 1078900 || |||||||| ||||||||||||| |||||| || || || || || || ||||| Sbjct 3570 GCGCGCATCAAGGAAGAGAACGCCACCATGACCCGCTGCGGCACCCCCTGCTGGAC 3515 >seq58517 Length=15342 Score = 89.7 bits (98), Expect = 4e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1076712 GTCAGAGTAATGACAACTTTGCGACATCCTAACGTTGTTCTTTTCATGGCTGCTTCAACA 1076771 || || |||||||| | ||||||| || ||||| || || |||||||| || || || Sbjct 10105 GTGAGGGTAATGACGGCGCTGCGACACCCCAACGTGGTGCTGTTCATGGCGGCGTCGACC 10164 Query 1076772 AAACCACCCAAAATGTGTATTGTAATGGAATTCATGGCTCTTGGCTC 1076818 || ||||| ||||||||||| || ||||| |||||||| || || || Sbjct 10165 AAGCCACCTAAAATGTGTATCGTGATGGAGTTCATGGCCCTCGGATC 10211 >seq52479 Length=9675 Score = 89.7 bits (98), Expect = 4e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1076712 GTCAGAGTAATGACAACTTTGCGACATCCTAACGTTGTTCTTTTCATGGCTGCTTCAACA 1076771 || || |||||||| | ||||||| || ||||| || || |||||||| || || || Sbjct 6284 GTGAGGGTAATGACGGCGCTGCGACACCCCAACGTGGTGCTGTTCATGGCGGCGTCGACC 6225 Query 1076772 AAACCACCCAAAATGTGTATTGTAATGGAATTCATGGCTCTTGGCTC 1076818 || ||||| ||||||||||| || ||||| |||||||| || || || Sbjct 6224 AAGCCACCTAAAATGTGTATCGTGATGGAGTTCATGGCCCTCGGATC 6178 >seq45031 Length=9623 Score = 89.7 bits (98), Expect = 4e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1076712 GTCAGAGTAATGACAACTTTGCGACATCCTAACGTTGTTCTTTTCATGGCTGCTTCAACA 1076771 || || |||||||| | ||||||| || ||||| || || |||||||| || || || Sbjct 5238 GTGAGGGTAATGACGGCGCTGCGACACCCCAACGTGGTGCTGTTCATGGCGGCGTCGACC 5179 Query 1076772 AAACCACCCAAAATGTGTATTGTAATGGAATTCATGGCTCTTGGCTC 1076818 || ||||| ||||||||||| || ||||| |||||||| || || || Sbjct 5178 AAGCCACCTAAAATGTGTATCGTGATGGAGTTCATGGCCCTCGGATC 5132 >seq45030 Length=9676 Score = 89.7 bits (98), Expect = 4e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1076712 GTCAGAGTAATGACAACTTTGCGACATCCTAACGTTGTTCTTTTCATGGCTGCTTCAACA 1076771 || || |||||||| | ||||||| || ||||| || || |||||||| || || || Sbjct 3392 GTGAGGGTAATGACGGCGCTGCGACACCCCAACGTGGTGCTGTTCATGGCGGCGTCGACC 3451 Query 1076772 AAACCACCCAAAATGTGTATTGTAATGGAATTCATGGCTCTTGGCTC 1076818 || ||||| ||||||||||| || ||||| |||||||| || || || Sbjct 3452 AAGCCACCTAAAATGTGTATCGTGATGGAGTTCATGGCCCTCGGATC 3498 >seq57051 Length=2261 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1078773 CATCGTGACATTAAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCC 1078832 || || ||| | ||||| || || | || | || || || ||||||||||| | ||| Sbjct 1552 CACCGCGACCTGAAGCCGTCGAACCTGCTGGTGGACGAGAACTGGAATGTCAAGGTGGCC 1611 Query 1078833 GATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCT 1078892 || || || || || |||||||| || ||||||| || ||||||||| || || ||||| Sbjct 1612 GACTTCGGGTTCGCGCGCATCAAGGAGGAGAACGTCACCATGACTCGCTGCGGCACTCCC 1671 Query 1078893 TGTTGGAC 1078900 || ||||| Sbjct 1672 TGCTGGAC 1679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777820686945940