Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq58066 183 4e-41 seq57096 107 2e-18 seq41485 107 2e-18 seq41484 107 2e-18 seq40155 100 3e-16 seq52012 98.7 1e-15 seq53831 96.9 4e-15 >seq58066 Length=10012 Score = 183 bits (202), Expect = 4e-41 Identities = 879/1373 (64%), Gaps = 52/1373 (4%) Strand=Plus/Plus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTT---CCATGCGTACATATGCATTGA 109463 |||||| || ||||| || || ||||| || ||| ||| ||||| | ||||| || Sbjct 5535 GCGAAGGTAGTACATGCCGGTCTTGAGGCC---CTTGCGCCAGGCGTAGAAGTGCATCGA 5591 Query 109464 AGAGAGTTTGGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGA 109522 | ||| |||| || | || ||| || || | | ||| | |||||| ||| |||| Sbjct 5592 GGTGAGCTTGGCAAACGAGGG-CTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGA 5650 Query 109523 TGAATCGACCA-CGATCAGCCGCCATGTCGATGAT-ACACTTTTGGCTAATTTCCCAGAC 109580 || | | | | ||||| || |||||||||||||| || | | | | | |||| || Sbjct 5651 TGTAG-GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCT-CCCACAC 5708 Query 109581 AGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC 109640 |||||||||| |||||||| || ||||| || ||| ||||| || | ||||| Sbjct 5709 GGTCTTGTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACCGAGCCGTT 5768 Query 109641 AGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700 | || | | ||| | | | ||||||||| ||| || | ||| ||| Sbjct 5769 GTGCGAGACGAGCTTGTTCTTGAGCGCGGGCGACCAGAGGCCGCGCTGCTGGAGCTCGCG 5828 Query 109701 AACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTT 109760 | ||| |||| |||||| ||| || || || || || | || ||| ||||||||| Sbjct 5829 CAGAAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATACGGCGGGTGTAGATGTT 5888 Query 109761 AGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGG 109820 ||||||||||| || || ||||| |||||||| ||||| || | || || || ||||| Sbjct 5889 GGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGG 5948 Query 109821 CATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT--TCGTCTTTACCCGCTCACGCATT 109878 |||||| |||| ||| || ||| || ||||| | | | | | | | ||| Sbjct 5949 CATGGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGAT----GTTGGCGCGGA 6004 Query 109879 GCGT--CCCAATCATAAC-GACC-ACTAAATTTAGTCTCACCATCCCACATATCTGGTTG 109934 |||| |||| || | | | || || | | | | |||| | || || || Sbjct 6005 GCGTGGCCCAGTCCCACCTGTCCGAC--------GGCACGACGCCCCAGAGGTCGGGCTG 6056 Query 109935 AAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGC 109994 || |||| | || || || |||| | | ||| ||| | ||||| |||| || Sbjct 6057 GAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGC 6116 Query 109995 CAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCAT 110054 | |||| || || | || || || | || || ||||| || || | || | | Sbjct 6117 GAGCTCGTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTCTCGAAGAT-GGCGCGGT--T 6173 Query 110055 GAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAG 110111 ||| ||| | ||| || | || | || | | | || || || || || || Sbjct 6174 GAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAG 6233 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||| || |||| || ||||| | || |||||| ||| || || || Sbjct 6234 GCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGCCTCGGGCAC 6293 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 |||||| ||||| |||||| ||| || || ||||| || || |||| || || Sbjct 6294 GGGGTAGTAGTTGATGTCGATCACCTTGTTAAGGTTCTTGGTGACCACCTTCACGACGTC 6353 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAAT 110291 || || || | || || ||| ||| | || ||| | ||||| || || | Sbjct 6354 GTGCAGCTTCTGGTGGTCAAAC----TCG--CCGTTGGTGATGAACTTGGGCAGCGCGAG 6407 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTA 110349 || || || |||||||| | |||||| | || ||||| | | | ||||| Sbjct 6408 CGAGGCCAGGTTGCACACGGCCACCTCGTC--GGGCGACGTGTACTGGACGACCTCCGTG 6465 Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 |||| ||| || || ||| || | || || ||| || || ||| |||||| || Sbjct 6466 CACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCG 6525 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 ||||| || |||||||| || || || || || |||| |||| ||| ||||| ||| Sbjct 6526 TCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCAC 6585 Query 110470 ACATCGGCGGCGGGGAC--AGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527 | || ||| ||| | ||| ||| | || |||| |||||| |||| Sbjct 6586 AGCTCCTGGGCCTTGACCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACT 6643 Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 ||||| || |||| || || || | || || |||| || ||| || |||| Sbjct 6644 TCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGTTGGGGCAAAAGA 6703 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | ||||| | || ||| ||| || | ||||||||||||||| |||||||||| |||| Sbjct 6704 GCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA-GGCCG 6762 Query 110648 -AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAG 110706 |||| || || ||| || ||| || | || ||||| || || | ||| Sbjct 6763 TAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAG 6822 Query 110707 TCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 || | ||| |||| |||||| || ||||| |||| |||| | ||||| || Sbjct 6823 TCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 6875 >seq57096 Length=4203 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 3640 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCA 3699 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 3700 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 3759 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 3760 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 3818 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 3819 CGCCCAGTCGGCCTT 3833 >seq41485 Length=1387 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 564 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCA 505 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 504 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 445 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 444 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 386 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 385 CGCCCAGTCGGCCTT 371 >seq41484 Length=9505 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 370 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCA 429 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 430 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 489 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 490 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 548 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 549 CGCCCAGTCGGCCTT 563 >seq40155 Length=7435 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 26901 AAAGAAAGTCTGGTATGCACCCAACAAATTTGAGTCATATGGGGAGGAAGAGATTAAAGC 26960 |||||| || | || || |||||| |||||| | || |||||| ||||| || || Sbjct 4554 AAAGAAGGTGTACTACGCCCCCAACGGCTTTGAGGCCTACGGGGAGCTCGAGATCAAGGC 4613 Query 26961 CGTTGAGGCTTGCTTGCGCGATGGCTGGCTCGCTGGCTTTGGTGATCGTACTGTGGAATT 27020 ||| |||| ||||||||| ||||||||||| |||||||| | || ||| Sbjct 4614 CGTCGAGGATTGCTTGCGAAGCGGCTGGCTCGCCGGCTTTGGAAACTACACCCAACGATT 4673 Query 27021 TGAAAAGAGGGTCGCTGACCTCTTCGGTAAGAAATTTGGACTATTTGTGAACTCTGGC 27078 || ||||||||||| | |||||| || ||||| | || || ||||| ||||| ||| Sbjct 4674 CGAGAAGAGGGTCGCCGGCCTCTTTGGCAAGAAGTACGGCCTGTTTGTCAACTCGGGC 4731 >seq52012 Length=6832 Score = 98.7 bits (108), Expect = 1e-15 Identities = 210/309 (68%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 109534 CGATCAGCCGCCATGTCGATGAT-ACACTTTTGGCTA-ATTTCCCAGACAGTCTTGTACA 109591 || ||||| |||| || |||||| || | | || | || ||||| ||||||||||| | Sbjct 5043 CGGTCAGCGGCCAAGTTGATGATGACGCACT--GCAAGATCTCCCACACAGTCTTGTAGA 5100 Query 109592 AATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCA 109651 ||||| || | || || || | ||| | || | ||||||| | || || Sbjct 5101 GGGCCTTGAGGTCTTGAGGGATCTCATCAATGCTCTGCACAGAGCCAT-----TGCAACA 5155 Query 109652 TGAG-ATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGC 109710 || || |||||||| | |||||||| || || |||| ||| ||||| ||| Sbjct 5156 ATAGCATGCTTCATCTTCTCGGACCAGAGCCCTCTCTGCATGAGGTCGCGCACAAGGTGC 5215 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 ||||||||| | || || || | || || | ||||||||| ||||||||| Sbjct 5216 GGGTTGACCACCATGAAGTCGCCTCCGAGCATGATGCACTTGTAGATGTTGGTCGTGTAG 5275 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 |||||||| |||| ||| || ||||| |||| || ||||| |||||||| | ||| Sbjct 5276 GGTTCGAACGCCTCACAGTTACCGAGGATCTGTGACGTCGAAGCGGTGGGCATCAGCGCC 5335 Query 109831 ATGAGAAGA 109839 | || ||| Sbjct 5336 ACCAGCAGA 5344 >seq53831 Length=10026 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| ||| || || || || || | ||||||||| || |||| || || Sbjct 5901 GGCAAACTCTGCGTGCAGGCCCTCGTCGCCGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 5842 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | |||||| ||||| ||||||| ||| || || || |||||||| Sbjct 5841 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 5782 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGA-----CTTGTC 119668 |||||| || |||||| ||| || ||||| ||||| | ||||||| ||||| Sbjct 5781 GCCCTCGACGGTGGCGAATCCGACGAGGCGCTCGGCAAAGGTGTCGAGATCCTCCTTGTT 5722 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 || |||| | ||||| | |||||| || | |||| || || | |||||| | Sbjct 5721 GATCCACCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTCTCGATGGCGTT 5662 Query 119729 GAAAAGTTGCTTCTTTTC 119746 || || || |||||| Sbjct 5661 AAAGAGGTGGGCCTTTTC 5644 Score = 89.7 bits (98), Expect = 6e-13 Identities = 235/360 (65%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 ||||||||| ||||||||||||||||| || || || || ||| ||||||| ||| || Sbjct 9553 GTTGCATGCGTCCTTATAGAGCATGTAGGGCGTGCCCGTCTCCACTTGTGACTCGAGGAT 9612 Query 110460 GGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 || ||| | || ||| || || | ||| | |||||| |||||| Sbjct 9613 CGCGAACCACAGCTCCTGGGCCTTGATGGTGCGGCGGGCGCGGCCTTCCCGCTCGTAGCG 9672 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579 || ||| | |||||||| | | ||| | || || ||||||| || | || ||| Sbjct 9673 GGCGTAGAGTTCCTCAAACTTGTCTCCCCAGACGTCCTGAAGACCCGGTGCTTCGTTGGG 9732 Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639 | ||| || | ||||| |||| || | ||||||||| || || || | ||| Sbjct 9733 ATCGAACAGCG--------CCACCAGCCTCGACGCGCTTCATGAATAGATCGGGGACCCA 9784 Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699 || || |||| ||||| || || ||| || | || ||||| | || || Sbjct 9785 CAGGGCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCCTGAGATC 9844 Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 | || || | ||| ||||| ||||| || || || |||| | || || |||||| || Sbjct 9845 GAGGAACTCGAAGATGTCCGAATGCCAGGGCTCCAGGTAGATCGTGAAGGCTCCCTTGCG 9904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588530660522000