Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq58066 132 6e-26 seq53831 118 1e-21 seq39829 107 2e-18 seq57096 93.3 5e-14 seq41485 93.3 5e-14 seq41484 93.3 5e-14 >seq58066 Length=10012 Score = 132 bits (146), Expect = 6e-26 Identities = 322/485 (66%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || |||| || |||| ||||| || ||| ||| || ||||||| Sbjct 6392 ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACT 6451 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || || |||| ||| || || || || || | | || ||||| || Sbjct 6452 GGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACT 6511 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | |||||| || |||||||| |||||||||||||| || ||||| |||| |||| || Sbjct 6512 TGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGA 6571 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGT 106691 | || || ||||| || ||| || | | | || || |||||| ||||| Sbjct 6572 GGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTGCTCGT 6631 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 | ||| | || ||||||| ||| || |||| | || || || |||| || Sbjct 6632 AGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGT 6691 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || || || || ||||| | || ||| ||| || ||||||||||| ||||| |||| Sbjct 6692 TGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAA 6751 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT- 106870 |||||||| | |||||||| | || ||| || | || ||||| || | Sbjct 6752 TCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CTTCTTC 6810 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || ||| Sbjct 6811 AGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCC 6870 Query 106931 TTTCG 106935 || || Sbjct 6871 TTGCG 6875 Score = 109 bits (120), Expect = 6e-19 Identities = 215/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || || |||| ||||| | || |||| | | || || | ||||| || Sbjct 7110 CCGATGCCGCCGGCTGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 7169 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 7170 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGTG 7229 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 7230 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 7289 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | || | |||| ||| ||| | ||||||||||| ||||| | |||| Sbjct 7290 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCATG 7349 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 107360 | |||||| || | || |||| |||| || |||||| ||| ||| |||| Sbjct 7350 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGAGGTAGGAGCGCTCGAGGG 7407 Query 107361 TTTTGAGACCAAAGTA 107376 | |||| |||||||| Sbjct 7408 TCTTGAAGCCAAAGTA 7423 >seq53831 Length=10026 Score = 118 bits (130), Expect = 1e-21 Identities = 255/379 (67%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 |||||||| | ||||||| || ||||| ||||||||||||||||| ||||||||| Sbjct 9539 TGGTTACTTTCGCTGTTGCATGCGTCCTTATAGAGCATGTAGGGCGTGCCCGTCTCCACT 9598 Query 106622 TGTGACTTGAGAATTGCCTTCCACA---CATCGGC--GGCTGGTACAATGGCGTTGGCCC 106676 ||||||| ||| || || ||||| | | ||| | |||| | |||| ||| | Sbjct 9599 TGTGACTCGAGGATCGCGAACCACAGCTCCTGGGCCTTGATGGTGC---GGCG--GGCGC 9653 Query 106677 GTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGA 106736 | || ||| |||||| | |||||| | ||||||| || ||| |||| | Sbjct 9654 GGCCTTCCCGCTCGTAGCGGGCGTAGAGTTCCTCAAACTTGTCTCCCCAGACGTCCTGAA 9713 Query 106737 GACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 106796 |||| ||||| | || ||| ||| || | ||||| |||| || ||||||| Sbjct 9714 GACCCGGTGCTTCGTTGGGATCGAACAGCG--------CCACCAGCCTCGACGCGCTTCA 9765 Query 106797 TGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCAC 106856 |||| || || || | |||||||| | ||||| || | | || ||| || | | Sbjct 9766 TGAATAGATCGGGGACCCACAGGGCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGC 9825 Query 106857 CTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 106916 | ||||| | | || |||||||| | ||| |||| ||||| ||||| || |||| Sbjct 9826 CGTGGTTCTTCCTGAGATCGAGGAACTCGAAGATGTCCGAATGCCAGGGCTCCAGGTAGA 9885 Query 106917 CTGCGATAGATCCCTTTCG 106935 | || | |||||| || Sbjct 9886 TCGTGAAGGCTCCCTTGCG 9904 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 ||||||||| ||| || ||||| || | | || || || || |||||| ||||| Sbjct 5901 GGCAAACTCTGCGTGCAGGCCCTCGTCGCCGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 5842 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| || ||||| | ||| | || | ||||| || || ||||||||||| Sbjct 5841 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 5782 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG-CGAGA--CTTTGTGTC 117449 ||||| || || || | | ||||||||||| |||| | ||||| || ||| Sbjct 5781 GCCCTCGACGGTGGCGAATCCGACGAGGCGCTCGGCAAAGGTGTCGAGATCCTCCTTGTT 5722 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 | ||| ||| ||||| | |||||||||| | | || || || | |||||| | Sbjct 5721 GATCCACCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTCTCGATGGCGTT 5662 Query 117510 AAA 117512 ||| Sbjct 5661 AAA 5659 >seq39829 Length=6283 Score = 107 bits (118), Expect = 2e-18 Identities = 251/374 (67%), Gaps = 5/374 (1%) Strand=Plus/Minus Query 106563 GGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCT 106622 ||||||| || |||||| || ||||| ||||||||||||||||| |||||||| | Sbjct 4624 GGTTACTTTTGCGGTTGCAAGCGTCCTTATAGAGCATGTAGGGCGTGCCCGTCTCGACTT 4565 Query 106623 GTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCC 106681 |||||| ||| || || ||||| || ||| | | | ||| |||| || || Sbjct 4564 GTGACTCGAGGATCGCGAACCACAGCTCCTGGGCCTTGATAGT-GCGGCGGCCACGGCCT 4506 Query 106682 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCT 106741 ||| |||||| |||||||| | || |||| || ||| | || |||| Sbjct 4505 TCCCTCTCGTAGCGGGTGTAGAGTCCCTCGAACTTATCTCCCCAGACTTCCTGAAGACTC 4446 Query 106742 GGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAA 106801 ||||| | || ||| ||| || ||||| | ||||| ||||||| ||||||||||| Sbjct 4445 GGTGCTTCGTTGGGATCGAACAGCGACCAGTAGCCACCAGCCTCAACGCGCTTCATGAAT 4386 Query 106802 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 106861 || || || | ||| |||| | ||||| || | | || | || || | || ||| Sbjct 4385 AGATCGGGGACCCATAGGGTGTAGAAGAGGTCGC--GAGCGCGGTTC-TCCTTGCCGTGG 4329 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 | | | | |||||||| | ||| ||| ||||| ||||| || |||| | | Sbjct 4328 TGCTTTTTGAGATTGAGGAACTCAAAGATGTCCAAATGCCAGGGCTCCAGGTAGATCGTG 4269 Query 106922 ATAGATCCCTTTCG 106935 | | ||||||||| Sbjct 4268 AAGGCTCCCTTTCG 4255 >seq57096 Length=4203 Score = 93.3 bits (102), Expect = 5e-14 Identities = 262/393 (67%), Gaps = 11/393 (3%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 3450 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 3509 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | ||| | ||| | ||||||||||| || ||||| | Sbjct 3510 GAGGGCCACGGGGAGCGACTCCGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 3569 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 3570 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 3626 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 3627 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 3685 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 3686 CGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 3745 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 3746 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 3805 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCT 117481 | ||| ||||| ||||| | |||||||||| Sbjct 3806 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCT 3838 >seq41485 Length=1387 Score = 93.3 bits (102), Expect = 5e-14 Identities = 262/393 (67%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 754 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 695 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | ||| | ||| | ||||||||||| || ||||| | Sbjct 694 GAGGGCCACGGGGAGCGACTCCGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 635 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 634 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 578 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 577 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 519 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 518 CGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 459 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 458 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 399 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCT 117481 | ||| ||||| ||||| | |||||||||| Sbjct 398 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCT 366 >seq41484 Length=9505 Score = 93.3 bits (102), Expect = 5e-14 Identities = 262/393 (67%), Gaps = 11/393 (3%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 180 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 239 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | ||| | ||| | ||||||||||| || ||||| | Sbjct 240 GAGGGCCACGGGGAGCGACTCCGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 299 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 300 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 356 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 357 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 415 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 416 CGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 475 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 476 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 535 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCT 117481 | ||| ||||| ||||| | |||||||||| Sbjct 536 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCT 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589534700767600