Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq49253 100 2e-16 seq60261 89.7 4e-13 >seq49253 Length=1508 Score = 100 bits (110), Expect = 2e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | || || || || || ||||| || ||||| ||||| | || | | | Sbjct 1355 ACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCC 1296 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||| || || || || | ||||| ||||| || ||||| || || || Sbjct 1295 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTT 1236 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || ||||| || || | || | ||||| |||| || || || || |||| Sbjct 1235 GTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 1176 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || |||||||| | || || || || |||||||||||| Sbjct 1175 GGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGGTT 1136 >seq60261 Length=7311 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 101297 TCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 ||||||| || | | | || || | ||||| || || || || | ||||| |||||| Sbjct 1531 TCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCG 1590 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTT 101416 ||||| ||||| || || || ||||| || || || || | || | ||||| |||| Sbjct 1591 GGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCAATGGTGTCGGACGAC 1650 Query 101417 TCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || |||| ||| ||||| || | || || || || ||||||||| Sbjct 1651 TCGACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395986254894930