Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq60216 87.8 1e-12 seq49253 87.8 1e-12 seq58772 86.0 5e-12 >seq60216 Length=3196 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || |||||| | || || | || | || || ||| ||| || || || ||||| || Sbjct 912 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 971 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 | || | || |||| || | |||||| |||||||| || || ||||| || |||| Sbjct 972 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGG 1031 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 ||| | |||||||||||| ||||||||| || || | | | || || ||| Sbjct 1032 GGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTC 1091 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | || ||||| || || |||| || || || || |||||||| Sbjct 1092 GACCTCGAGGGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1142 >seq49253 Length=1508 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| ||||| || ||||| || | || | || |||| || | |||| Sbjct 1342 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1283 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | ||||| ||||||||||| |||||| Sbjct 1282 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTT 1223 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | || || || || || || Sbjct 1222 TGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1163 Query 48744 AAAGTTTTTACAAAAATCTGCATCGT 48769 | || || || || |||||||| || Sbjct 1162 AGGGTCTTCACGAAGATCTGCATGGT 1137 >seq58772 Length=3437 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| || | || | ||| |||| || | |||| Sbjct 1825 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCAAGCTGC 1766 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | ||| | |||||||||||| ||||| Sbjct 1765 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 1706 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | || || || ||| ||||| | || || || || || ||| Sbjct 1705 TGCTTCACGTTCTCGATAGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 1646 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTGTGTACGTGTATGTCGAGCGCGCGTTGGT 48798 | || || || || |||||||| || | ||| ||| | || |||||||| Sbjct 1645 AGCGTCTTGACGAAGATCTGCATTGTTGGCTGCTGTGTGTGGCGCTTGCGTTGGT 1591 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| || | || | ||| |||| || | |||| Sbjct 2281 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTCAAGCTGC 2222 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | || | |||||||||||| ||||| Sbjct 2221 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 2162 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | || || || ||| ||||| | ||||| || || || ||| Sbjct 2161 TGCTTCACGTTCTCGATAGTGTCGGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTC 2102 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 2101 AGGGTCTTGACGAAGATCTGCAT 2079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380656764468270