Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq57119 100 2e-15 seq54490 100 2e-15 seq49918 100 2e-15 seq53763 89.7 3e-12 seq47833 89.7 3e-12 seq47832 89.7 3e-12 >seq57119 Length=7650 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || |||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 4171 AAGATGGCGTACCAAGCAGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 4112 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 4111 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 4059 >seq54490 Length=7411 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || |||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 3895 AAGATGGCGTACCAAGCAGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 3954 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 3955 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 4007 >seq49918 Length=7754 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || |||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 3480 AAGATGGCGTACCAAGCAGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 3539 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 3540 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 3592 >seq53763 Length=9698 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || || || ||||| ||||| || || |||||||| |||||| Sbjct 6929 AAGGTCGCCTACCAAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCCGGCATCGTCCAT 6988 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || ||||| || || |||||| Sbjct 6989 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGAGT 7045 >seq47833 Length=10332 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || || || ||||| ||||| || || |||||||| |||||| Sbjct 4155 AAGGTCGCCTACCAAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCCGGCATCGTCCAT 4214 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || ||||| || || |||||| Sbjct 4215 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGAGT 4271 >seq47832 Length=9128 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || || || ||||| ||||| || || |||||||| |||||| Sbjct 2770 AAGGTCGCCTACCAAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCCGGCATCGTCCAT 2711 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || ||||| || || |||||| Sbjct 2710 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGAGT 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265584490402520