Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq58066 109 7e-19 seq53831 98.7 1e-15 seq57096 93.3 5e-14 seq41485 93.3 5e-14 seq41484 93.3 5e-14 >seq58066 Length=10012 Score = 109 bits (120), Expect = 7e-19 Identities = 851/1358 (63%), Gaps = 30/1358 (2%) Strand=Plus/Minus Query 75587 CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTT 75646 |||||||| | |||| ||||| | || || ||||| || || ||| | || ||||| Sbjct 6875 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 6816 Query 75647 GAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCT 75705 || | | || ||||| || | || ||| || | |||||||| | ||| Sbjct 6815 GACCTGAAGAAG-AACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCT 6757 Query 75706 GTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTG 75765 ||||||||| ||||| ||||||||||| || ||| ||| || | ||||| || || || Sbjct 6756 GTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTG 6697 Query 75766 TCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACAC 75825 || || |||| || || || | |||| || ||| ||||||| || | ||| Sbjct 6696 CCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGA 6637 Query 75826 AAAGTATGAAGAGGAGGGTAGAGC-CAATGCGACTGTACCA-GCCGCCGATGTTTGGAAG 75883 || || ||||||| | || | ||| || | | ||| || | ||| Sbjct 6636 GCGCTACGAGCAGGAGGGCCGCGCGCGCCGCG--TGGTCAAGGCCCAGGAGCTGTGGTTC 6579 Query 75884 GCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGT 75943 || || ||| | || |||| ||||| || || || || ||||| |||||||| || || Sbjct 6578 GCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGC 6519 Query 75944 AACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAA 76003 ||| ||| ||||| || | | || || ||| || || || || |||||||| Sbjct 6518 AACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAG 6459 Query 76004 ATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTT 76063 | | ||||||| || ||| ||| || ||||| |||| || |||| || Sbjct 6458 GTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTG 6399 Query 76064 CCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACA 76123 || |||| || || | | || || ||||| | | || || || || || Sbjct 6398 CCCAAGT---TC-ATCACCA-AC-GGCGAGTTTGACCACCAGAAGCTGCACGACGTCGTG 6345 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAG 76180 ||| | || ||||| || || ||| || || |||| || | || ||||| ||| Sbjct 6344 AAGGTGGTCACCAAGAACCTTAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGAG 6285 Query 76181 ACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCG 76240 || || || || || ||||| ||||| || || || | || || || || || || Sbjct 6284 ---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGCC 6228 Query 76241 GATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAA-TGC 76299 || || || || | ||| || | | || || || ||| ||| | || || Sbjct 6227 GACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCGC 6168 Query 76300 TCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGC 76359 | ||||| || ||||| || |||| |||||| || || | || | | Sbjct 6167 GC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGGT 6109 Query 76360 CCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGA 76419 | | || |||| |||| | ||||| || ||||||||| | || ||| ||| || Sbjct 6108 CGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGCTCCAGCCCGA 6049 Query 76420 TATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAA 76479 | |||| | | | | || | ||||||| ||| | |||| Sbjct 6048 CCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATCGC 5989 Query 76480 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 76539 || | ||||| || ||| || | |||| || ||||| || ||||| ||| | || Sbjct 5988 CCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCA 5929 Query 76540 AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAAC 76599 ||| |||| || || || |||||||| || ||||| || ||||||||| | | | Sbjct 5928 GATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGTAT 5869 Query 76600 CCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGG 76659 |||||| || || || | | |||||| ||||||| | || ||| || || || Sbjct 5868 CCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTCCAGCAGCGCGG 5809 Query 76660 TCTCTGGT---CCAAGGATATGAAGGATCTCATGGTG-AAAGCGGGTGGTTCCATTCAAA 76715 ||||||| || | | ||| | ||| | | | | ||| | | || || Sbjct 5808 CCTCTGGTCGCCCGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCGGTC----CAGC 5753 Query 76716 ATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGA 76775 ||| || ||||| || || |||||||| || ||| || |||||||| || | Sbjct 5752 GCATCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGAGCTCCCGC 5693 Query 76776 TGAAAGATGTCATTGACATGGCCGCAGATCG-TGGTCGCTTCATTGATCAAAGTCAAAGT 76834 | | |||| ||||||||||| ||||| | | | || ||| || || || || Sbjct 5692 AGCGCGTCATCATCGACATGGCCGCCGATCGCTCGGC-CTACATCGACCAGAGCCAGTCG 5634 Query 76835 ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCG 76894 | || | | ||||| || || | |||||||| | || ||||| | ||||| Sbjct 5633 CTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTTCTACGCC 5574 Query 76895 TGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 ||| |||| ||||| ||||| |||||||| || || Sbjct 5573 TGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCG 5536 Score = 100 bits (110), Expect = 3e-16 Identities = 213/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| ||| |||||| || |||| |||| || Sbjct 7423 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCA--GGGTCGACGGCAAGATCG 7366 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| || || ||||| | ||| ||| |||| Sbjct 7365 TCGAGCGACCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCC 7306 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| |||| || | |||| ||||| || || | Sbjct 7305 CCGCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGA 7246 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||||| || || || || | |||||| |||| |||||||| || ||| | Sbjct 7245 CGCTCTTCAACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGA 7186 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||| | || || | | |||| || | ||||| |||| Sbjct 7185 AGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 7126 Query 75444 GGGCTGGGGGTATTGG 75459 || || || || || Sbjct 7125 CAGCCGGCGGCATCGG 7110 >seq53831 Length=10026 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 ||| | |||||| | || || || | | |||||||||| | ||||| ||| ||| Sbjct 5659 TTTAACGCCATCGAGACGGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCCATGCGGTGG 5718 Query 65050 TTTGACACAAAG--TCTCG-CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAG 65106 | ||| || ||||| | |||| ||||||||||| | | || || || ||| Sbjct 5719 ATCAACAAGGAGGATCTCGACACCTTTGCCGAGCGCCTCGTCGGATTCGCCACCGTCGAG 5778 Query 65107 GGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATG 65166 || ||||||||||| || || ||||| | || | ||| | ||||| || ||||||||| Sbjct 5779 GGCATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAACGCGGTCTCATG 5838 Query 65167 CCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTT 65226 || ||||| |||||| || || || || | | || ||||| || ||| |||||| Sbjct 5839 CCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCGGCGACGAGGGCCTGCACGCAGAGTTT 5898 Query 65227 GCC 65229 ||| Sbjct 5899 GCC 5901 >seq57096 Length=4203 Score = 93.3 bits (102), Expect = 5e-14 Identities = 262/393 (67%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTC--TCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || ||| ||||||||| Sbjct 3838 AGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCG 3779 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || || ||||| |||||||||||||| |||||| | | Sbjct 3778 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 3719 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 3718 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 3659 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 3658 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTCA 3602 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 3601 ACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCATCCTCGAGGCCGTCGAGATTGAGAAG 3543 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | ||| | ||| | ||||| |||||||| |||||| | || |||| | Sbjct 3542 GAATTCGTGACGGAGTCGCTCCCCGTGGCCCTCATCGGCATGAACGCCGACCTCATGTGC 3483 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||||||| |||| || | || || |||||| Sbjct 3482 CAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 3450 >seq41485 Length=1387 Score = 93.3 bits (102), Expect = 5e-14 Identities = 262/393 (67%), Gaps = 11/393 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTC--TCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || ||| ||||||||| Sbjct 366 AGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCG 425 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || || ||||| |||||||||||||| |||||| | | Sbjct 426 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 485 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 486 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 545 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 546 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTCA 602 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 603 ACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCATCCTCGAGGCCGTCGAGATTGAGAAG 661 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | ||| | ||| | ||||| |||||||| |||||| | || |||| | Sbjct 662 GAATTCGTGACGGAGTCGCTCCCCGTGGCCCTCATCGGCATGAACGCCGACCTCATGTGC 721 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||||||| |||| || | || || |||||| Sbjct 722 CAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 754 >seq41484 Length=9505 Score = 93.3 bits (102), Expect = 5e-14 Identities = 262/393 (67%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTC--TCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || ||| ||||||||| Sbjct 568 AGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCG 509 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || || ||||| |||||||||||||| |||||| | | Sbjct 508 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 449 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 448 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 389 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 388 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTCA 332 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 331 ACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCATCCTCGAGGCCGTCGAGATTGAGAAG 273 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | ||| | ||| | ||||| |||||||| |||||| | || |||| | Sbjct 272 GAATTCGTGACGGAGTCGCTCCCCGTGGCCCTCATCGGCATGAACGCCGACCTCATGTGC 213 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||||||| |||| || | || || |||||| Sbjct 212 CAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596118518811200