Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq51150 82.4 7e-11 seq51149 82.4 7e-11 >seq51150 Length=3240 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 3199 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 3140 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 3139 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 3082 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 3081 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 3022 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 3021 ACGGCGCGGCC 3011 >seq51149 Length=3250 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 3209 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 3150 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 3149 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 3092 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 3091 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 3032 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 3031 ACGGCGCGGCC 3021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475681653045200