Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq56944 96.9 3e-15 seq58772 91.5 1e-13 seq60216 89.7 4e-13 seq51907 89.7 4e-13 seq50290 89.7 4e-13 seq50289 89.7 4e-13 seq46138 89.7 4e-13 seq49253 84.2 2e-11 seq41697 82.4 6e-11 >seq56944 Length=8418 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || ||||| || | || ||||| ||||| ||| |||| ||| | Sbjct 6962 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 7021 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || |||||| || || |||||| | ||| ||||| Sbjct 7022 CGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCCCCTGATCA 7081 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| | || |||| |||||||| Sbjct 7082 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTGGCCGACTACAA 7141 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 7142 CATCCAGAAGGAGTCGAC 7159 >seq58772 Length=3437 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || ||||| || | || ||||| ||||| ||| |||| ||| | | Sbjct 1622 AATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 1681 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| ||| | || || || ||||| || || || ||| | ||| ||||| Sbjct 1682 CGATACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1741 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| || | || |||||||| Sbjct 1742 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCGCCGACTACAA 1801 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| || |||||||| ||| | ||| Sbjct 1802 CATCCAGAAGGAGTCCACGCTCCAC 1826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || ||||| ||||||||| |||| ||| ||| Sbjct 2079 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGAGCTC- 2137 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| ||| | || || || ||||| || || || ||| | || ||||| Sbjct 2138 CGACACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 2197 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| || |||| |||||||| Sbjct 2198 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTGGCCGACTACAA 2257 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| || |||||||| ||| | ||| Sbjct 2258 CATCCAGAAGGAGTCCACGCTCCAC 2282 >seq60216 Length=3196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || ||||| || || ||| |||| ||| ||| | Sbjct 1142 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACCCTCGAGGTCGAGAGCTCG 1083 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||||||| || || || ||| | ||| ||| || Sbjct 1082 -GACACGATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 1024 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||||| | || |||| |||||||| Sbjct 1023 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 964 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 963 CATCCAGAAGGAGTCCAC 946 >seq51907 Length=4977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 2447 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2506 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||| | || |||| | || | ||||| || Sbjct 2507 CACTTCAACCCCTTCG-GCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGG 2565 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 2566 CGATCTCGGCAACGTC 2581 >seq50290 Length=5021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 2531 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2472 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||| | || |||| | || | ||||| || Sbjct 2471 CACTTCAACCCCTTCG-GCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGG 2413 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 2412 CGATCTCGGCAACGTC 2397 >seq50289 Length=3841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 911 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 970 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||| | || |||| | || | ||||| || Sbjct 971 CACTTCAACCCCTTCG-GCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGG 1029 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 1030 CGATCTCGGCAACGTC 1045 >seq46138 Length=3865 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 2955 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2896 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||| | || |||| | || | ||||| || Sbjct 2895 CACTTCAACCCCTTCG-GCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGG 2837 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 2836 CGATCTCGGCAACGTC 2821 >seq49253 Length=1508 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 1140 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 1199 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || || || | ||| |||||| Sbjct 1200 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 1259 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 1260 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 1319 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || ||||||||||| ||| | ||| Sbjct 1320 ATCCAAAAGGAGTCCACGCTCCAC 1343 >seq41697 Length=921 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 229 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCAG 170 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || |||||| || || || ||| | || || || Sbjct 169 CGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 110 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||||| | || |||| |||||||| Sbjct 109 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 50 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 49 CATCCAGAAGGAGTCCAC 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398582739297610