Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq58999 104 2e-16 seq39977 98.7 7e-15 seq59560 95.1 9e-14 seq41130 95.1 9e-14 seq55881 93.3 3e-13 seq48312 93.3 3e-13 seq39241 93.3 3e-13 seq57051 87.8 1e-11 seq57119 86.0 5e-11 seq54490 86.0 5e-11 seq53763 86.0 5e-11 seq49918 86.0 5e-11 seq47833 86.0 5e-11 seq47832 86.0 5e-11 >seq58999 Length=9553 Score = 104 bits (114), Expect = 2e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 1047957 ATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTG 1048016 || || || || ||||| || || || ||||| || |||||| |||| ||||| || ||| Sbjct 5866 ATCTCGGGTGCGGTCCAGCAGGGCGTGCCACAGCGGGTCATGGTGGCATTCTCCTCCTTG 5807 Query 1048017 ATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTT 1048076 ||||| || || || |||||||| | || || ||||| || ||||| | || | ||| Sbjct 5806 ATGCGCGCGAACCCGAAATCGGCTACCTTCACGTTCCAGTTCTCATCCACCAGCAGATTG 5747 Query 1048077 GATGGCTTAATGTCACGATGAATAATC 1048103 || ||||| | || |||||||||||| Sbjct 5746 GACGGCTTGAGATCGCGATGAATAATC 5720 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 1061536 ACTTCCCACATAACAATTCCAAAAGAGAATACATCTACTTTCTCTGTATATTTTTCTCCA 1061595 || |||||||| | || || || ||| | || ||| | ||| | || || || || Sbjct 5932 ACCTCCCACATGATGATGCCGAACGAGTAAACGTCTGCGGACTCAGAGTACTTCTCGCCG 5873 Query 1061596 CGAATAATTTCAGGAGCAGTCCAACAAGGAGTTCCACAACGTGTCATTACGGAATTTTCC 1061655 || | || || || || ||||| || || || ||||| || ||||| || ||| ||| Sbjct 5872 CGGAGTATCTCGGGTGCGGTCCAGCAGGGCGTGCCACAGCGGGTCATGGTGGCATTCTCC 5813 Query 1061656 TCTTTGATACGTGCAAATCCAAAATCAGCAATTTTCACATTCATACTATCATCAACTAGA 1061715 || ||||| || || || || ||||| || | ||||| ||| | ||||| || || Sbjct 5812 TCCTTGATGCGCGCGAACCCGAAATCGGCTACCTTCACGTTCCAGTTCTCATCCACCAGC 5753 Query 1061716 ATATTGGATGGTTTAATGTCACGATGAATAATAATTGG 1061753 | |||||| || || | || ||||||||||| || || Sbjct 5752 AGATTGGACGGCTTGAGATCGCGATGAATAATCATCGG 5715 >seq39977 Length=562 Score = 98.7 bits (108), Expect = 7e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1050051 GAGCCAAGAGCCATGAATTCCATTACAATGCACATTTTGGGTGGTTTAGTTGAAGCAGCC 1050110 ||||| || |||||| | ||||| ||||||||||| ||||| || || || | || ||| Sbjct 337 GAGCCGAGGGCCATGTACTCCATGACAATGCACATCTTGGGCGGCTTGGTGCATGCTGCC 278 Query 1050111 ATGAAAAGAACAACGTTAGGATGTCGCAAAGTTGTCATTACTCTGACCTCATCCTTGAAA 1050170 ||||| || || ||||| ||||| |||| | |||||| || | ||||| |||||||| Sbjct 277 ATGAACAGCACCACGTTGGGATGCCGCAGCGCTGTCATCACCCGCACCTCCTCCTTGAAG 218 Query 1050171 TT 1050172 || Sbjct 217 TT 216 >seq59560 Length=3351 Score = 95.1 bits (104), Expect = 9e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 1047891 ACTTCCCACATAACAATTCCAAAAGAAAATACATCGACCTTTTCGTCATAGATATCATTA 1047950 ||||||||||| | || || || || | || ||| |||||||||| || | || Sbjct 3181 ACTTCCCACATGATGATGCCGAACGAGTACACGTCGGCCTTTTCGTCGTACTTCTCGCCG 3240 Query 1047951 CGAATAATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCT 1048010 || || | || || || ||||| || || || ||||| || ||||| | |||||||| Sbjct 3241 CGGATGACCTCCGGTGCCGTCCAGCAGGGGGTGCCACAGCGGGTCATCGTCGCGTTCTCC 3300 Query 1048011 TCTTTGATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTC 1048060 || |||||||| || |||||||| ||||| | || || ||||| || || Sbjct 3301 TCCTTGATGCGCGCGAATCCAAAGTCGGCCACCTTCACGTTCCAGTTCTC 3350 >seq41130 Length=1930 Score = 95.1 bits (104), Expect = 9e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 1047891 ACTTCCCACATAACAATTCCAAAAGAAAATACATCGACCTTTTCGTCATAGATATCATTA 1047950 ||||||||||| | || || || || | || ||| |||||||||| || | || Sbjct 1760 ACTTCCCACATGATGATGCCGAACGAGTACACGTCGGCCTTTTCGTCGTACTTCTCGCCG 1819 Query 1047951 CGAATAATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCT 1048010 || || | || || || ||||| || || || ||||| || ||||| | |||||||| Sbjct 1820 CGGATGACCTCCGGTGCCGTCCAGCAGGGGGTGCCACAGCGGGTCATCGTCGCGTTCTCC 1879 Query 1048011 TCTTTGATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTC 1048060 || |||||||| || |||||||| ||||| | || || ||||| || || Sbjct 1880 TCCTTGATGCGCGCGAATCCAAAGTCGGCCACCTTCACGTTCCAGTTCTC 1929 >seq55881 Length=4451 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1047969 GTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTGATGCGAGCAAAT 1048028 ||||| || || || || || || |||||| ||||||||||||| |||||||| || || Sbjct 1700 GTCCAGCAGGGGGTGCCGCAGCGGGTCATGGTGGCGTTCTCTTCCTTGATGCGCGCGAAC 1641 Query 1048029 CCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTTGATGGCTT 1048084 || || ||||| | || || ||||| ||||| |||| ||| | ||| || ||||| Sbjct 1640 CCGAAGTCGGCCACCTTCACGTTCCAGTTTTCGTCGACGAGCAGATTGGAGGGCTT 1585 >seq48312 Length=9218 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1047969 GTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTGATGCGAGCAAAT 1048028 ||||| || || || || || || |||||| ||||||||||||| |||||||| || || Sbjct 7874 GTCCAGCAGGGGGTGCCGCAGCGGGTCATGGTGGCGTTCTCTTCCTTGATGCGCGCGAAC 7933 Query 1048029 CCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTTGATGGCTT 1048084 || || ||||| | || || ||||| ||||| |||| ||| | ||| || ||||| Sbjct 7934 CCGAAGTCGGCCACCTTCACGTTCCAGTTTTCGTCGACGAGCAGATTGGAGGGCTT 7989 >seq39241 Length=4859 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1047969 GTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTGATGCGAGCAAAT 1048028 ||||| || || || || || || |||||| ||||||||||||| |||||||| || || Sbjct 3515 GTCCAGCAGGGGGTGCCGCAGCGGGTCATGGTGGCGTTCTCTTCCTTGATGCGCGCGAAC 3574 Query 1048029 CCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTTGATGGCTT 1048084 || || ||||| | || || ||||| ||||| |||| ||| | ||| || ||||| Sbjct 3575 CCGAAGTCGGCCACCTTCACGTTCCAGTTTTCGTCGACGAGCAGATTGGAGGGCTT 3630 >seq57051 Length=2261 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1047969 GTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTGATGCGAGCAAAT 1048028 ||||| || ||||| || || ||||||||| || ||||||| || |||||||| || || Sbjct 1679 GTCCAGCAGGGAGTGCCGCAGCGAGTCATGGTGACGTTCTCCTCCTTGATGCGCGCGAAC 1620 Query 1048029 CCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTTGATGGCTTAATG 1048088 || || ||||| | ||||||||||| || || || | || | || || ||||| | | Sbjct 1619 CCGAAGTCGGCCACCTTGACATTCCAGTTCTCGTCCACCAGCAGGTTCGACGGCTTCAGG 1560 Query 1048089 TCACGATG 1048096 || || || Sbjct 1559 TCGCGGTG 1552 >seq57119 Length=7650 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1049880 ACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGAGTG 1049939 || ||||| |||||||| ||| || | ||||| | ||||||||||| ||||| Sbjct 4059 ACCTTGACGTTCCACTTGGAATCGAGCAACAGATTGAGCGACTTGAGATCGCGATGCACA 4118 Query 1049940 ATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGACTTTG 1049999 || || ||||| |||| ||||||||| ||||| | |||||| || || || ||| | Sbjct 4119 ATGCCGGAGGAGTGCAGGAAATGCATGCCCTTGGCTGCTTGGTACGCCATCTTGTTCCGG 4178 Query 1050000 AGAGCAAAAGGTATATCTGGGATGAGTTCGTTTTTCAACA 1050039 || || || || | || || ||||| ||||| | || || Sbjct 4179 AGCGCGAAGGGCAGGTCGGGAATGAGCTCGTTGTGCAGCA 4218 >seq54490 Length=7411 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1049880 ACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGAGTG 1049939 || ||||| |||||||| ||| || | ||||| | ||||||||||| ||||| Sbjct 4007 ACCTTGACGTTCCACTTGGAATCGAGCAACAGATTGAGCGACTTGAGATCGCGATGCACA 3948 Query 1049940 ATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGACTTTG 1049999 || || ||||| |||| ||||||||| ||||| | |||||| || || || ||| | Sbjct 3947 ATGCCGGAGGAGTGCAGGAAATGCATGCCCTTGGCTGCTTGGTACGCCATCTTGTTCCGG 3888 Query 1050000 AGAGCAAAAGGTATATCTGGGATGAGTTCGTTTTTCAACA 1050039 || || || || | || || ||||| ||||| | || || Sbjct 3887 AGCGCGAAGGGCAGGTCGGGAATGAGCTCGTTGTGCAGCA 3848 >seq53763 Length=9698 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 1049876 ACTAACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATG 1049935 ||| || ||||| |||||||| || || || || || | ||||||||||| ||||| Sbjct 7045 ACTCACCTTGACGTTCCACTTGGAGTCGAGCAGCAGGTTGAGGGACTTGAGATCGCGATG 6986 Query 1049936 AGTGATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGAC 1049995 ||| || |||||||||||||| ||||| ||||| || ||||| || || | || || Sbjct 6985 GACGATGCCGGAGGAATGCAAGAAGTGCATGCCCTTGGAGGCTTGGTAGGCGACCTTCAC 6926 Query 1049996 TTTGAGA 1050002 || ||| Sbjct 6925 CTTCAGA 6919 >seq49918 Length=7754 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1049880 ACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGAGTG 1049939 || ||||| |||||||| ||| || | ||||| | ||||||||||| ||||| Sbjct 3592 ACCTTGACGTTCCACTTGGAATCGAGCAACAGATTGAGCGACTTGAGATCGCGATGCACA 3533 Query 1049940 ATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGACTTTG 1049999 || || ||||| |||| ||||||||| ||||| | |||||| || || || ||| | Sbjct 3532 ATGCCGGAGGAGTGCAGGAAATGCATGCCCTTGGCTGCTTGGTACGCCATCTTGTTCCGG 3473 Query 1050000 AGAGCAAAAGGTATATCTGGGATGAGTTCGTTTTTCAACA 1050039 || || || || | || || ||||| ||||| | || || Sbjct 3472 AGCGCGAAGGGCAGGTCGGGAATGAGCTCGTTGTGCAGCA 3433 >seq47833 Length=10332 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 1049876 ACTAACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATG 1049935 ||| || ||||| |||||||| || || || || || | ||||||||||| ||||| Sbjct 4271 ACTCACCTTGACGTTCCACTTGGAGTCGAGCAGCAGGTTGAGGGACTTGAGATCGCGATG 4212 Query 1049936 AGTGATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGAC 1049995 ||| || |||||||||||||| ||||| ||||| || ||||| || || | || || Sbjct 4211 GACGATGCCGGAGGAATGCAAGAAGTGCATGCCCTTGGAGGCTTGGTAGGCGACCTTCAC 4152 Query 1049996 TTTGAGA 1050002 || ||| Sbjct 4151 CTTCAGA 4145 >seq47832 Length=9128 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 1049876 ACTAACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATG 1049935 ||| || ||||| |||||||| || || || || || | ||||||||||| ||||| Sbjct 2654 ACTCACCTTGACGTTCCACTTGGAGTCGAGCAGCAGGTTGAGGGACTTGAGATCGCGATG 2713 Query 1049936 AGTGATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGAC 1049995 ||| || |||||||||||||| ||||| ||||| || ||||| || || | || || Sbjct 2714 GACGATGCCGGAGGAATGCAAGAAGTGCATGCCCTTGGAGGCTTGGTAGGCGACCTTCAC 2773 Query 1049996 TTTGAGA 1050002 || ||| Sbjct 2774 CTTCAGA 2780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737660596630740