Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq53109 96.9 3e-15 seq53831 93.3 4e-14 seq60261 91.5 1e-13 seq60216 91.5 1e-13 seq43031 89.7 5e-13 seq56944 87.8 2e-12 seq41697 87.8 2e-12 >seq53109 Length=5902 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| || ||||| || ||||| Sbjct 4433 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCGAGCTGCTTACCG 4374 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || || |||||||||||||| ||||| || ||||| || || || ||| Sbjct 4373 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTT 4314 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||||| || | || | |||||||||||||| || Sbjct 4313 ACGTTCTCGATGGTGTCGCTCGACTCTACCTCGAGGGTGATCGTCTTGCCGGTCAGGGTC 4254 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 4253 TTGACGAAGATCTGCATA 4236 >seq53831 Length=10026 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 50502 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50561 || |||||||| ||||| || |||||| ||||||| | | || ||||| | | ||| Sbjct 5965 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCGCTCCCGGTGGCGCTCATCGGC 6024 Query 50562 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50621 |||||||| | | | | |||| ||||||| |||||||| || ||| | || | || | Sbjct 6025 ATGAACGCGGGCCTCACGTGCCAGTACATCGAGTTTGTCGCCGACCGTCTGCTCGTGGCG 6084 Query 50622 CT--GGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATAT 50679 || || | || ||| |||| || || |||||||| || | ||| | || | Sbjct 6085 CTCGGGTGCGAC--AAACACTACAACGCCACCAACCCCTTCCCCTGGATGGAGCTGATCT 6142 Query 50680 CGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50726 | | |||||||| || ||||| ||||| | || || ||||| ||| Sbjct 6143 CACTCGAGGGCAAGACCAACTTCTTCGAGCGCCGAGTCGGCGAGTAC 6189 >seq60261 Length=7311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | |||| || || || || || |||||||| ||| Sbjct 1203 GCCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 1262 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| ||||| || || || || |||| ||||| ||||| |||||||| Sbjct 1263 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGG 1322 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| || ||||| || | | || | ||||| | | || || Sbjct 1323 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATTGTGTCCGAGCTCTCGAC 1382 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||||| || || ||||| || ||||| Sbjct 1383 CTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1430 >seq60216 Length=3196 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 946 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1005 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || || ||||| || || || ||||| || ||||| ||| ||||| || Sbjct 1006 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 1065 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | || | |||||||||||||| || Sbjct 1066 ACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTCAGCGTC 1125 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 1126 TTGACGAAGATCTGCATA 1143 >seq43031 Length=7181 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || || ||||| ||| | |||| ||| ||||| || || ||| Sbjct 19 GTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 78 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || || |||||||||||||| ||||| || ||||| ||| ||||| || Sbjct 79 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 138 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| ||| || || || | || | ||||||||||| | || Sbjct 139 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 198 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 199 TTCACGAAGATCTGCAT 215 >seq56944 Length=8418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | || | || || || || || |||||||| ||| Sbjct 7190 GCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 7131 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | ||| ||||| || |||||||| |||| || || |||||||| || || Sbjct 7130 CAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGGGGG 7071 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| ||| || || || | | || | ||||| | | || || Sbjct 7070 GATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCGAC 7011 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||||| || || ||||| || ||||| Sbjct 7010 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 6963 >seq41697 Length=921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | || | || || || || || |||||||| ||| Sbjct 1 GCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 60 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| ||||| || || || ||| |||| || || ||||| |||||||| Sbjct 61 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGG 120 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| ||| || || || | | || | ||||| ||| || || Sbjct 121 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGACTCAAC 180 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 181 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488174599668000