Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq52577 80.6 9e-11 seq52576 80.6 9e-11 >seq52577 Length=4116 Score = 80.6 bits (88), Expect = 9e-11 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 22843 GTTTGGCTTGTGCCAGATGATGTCCTGCCGGAGATACCAGCCGTCGTCCTGCAGCGCGAA 22902 ||| |||||||||||||||||||| ||| || ||||| |||||| | || || ||||| Sbjct 2042 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 2101 Query 22903 GGCCAGGCGCCAGGGCATGCCCATCAAGTCTTTCGGCTT 22941 ||||| | ||| |||| || || | ||| || ||||| Sbjct 2102 GGCCACTCTCCACGGCAGACCTATGAGGTCCTTGGGCTT 2140 >seq52576 Length=4185 Score = 80.6 bits (88), Expect = 9e-11 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 22843 GTTTGGCTTGTGCCAGATGATGTCCTGCCGGAGATACCAGCCGTCGTCCTGCAGCGCGAA 22902 ||| |||||||||||||||||||| ||| || ||||| |||||| | || || ||||| Sbjct 2042 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 2101 Query 22903 GGCCAGGCGCCAGGGCATGCCCATCAAGTCTTTCGGCTT 22941 ||||| | ||| |||| || || | ||| || ||||| Sbjct 2102 GGCCACTCTCCACGGCAGACCTATGAGGTCCTTGGGCTT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163249050851760