Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq53109 100 6e-16 seq60216 98.7 2e-15 seq56944 89.7 1e-12 >seq53109 Length=5902 Score = 100 bits (110), Expect = 6e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| || || || || | || | | ||| Sbjct 4452 ACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACC 4393 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || || ||||| || | || ||||| ||||| || || ||||| Sbjct 4392 ATCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTT 4333 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || || ||||| |||||| || || || || || || | | ||||| || | || | Sbjct 4332 GTCCTGGATCTTCTGCTTT-ACGTTCTCGATGGTGTCGCTCGACTCTACCTCGAGGGTGA 4274 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||| ||||| || || |||||||| Sbjct 4273 TCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4237 >seq60216 Length=3196 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| || || || || ||||| || || || || | Sbjct 916 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 975 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || |||||||| || | || || || || || Sbjct 976 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 1035 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || ||||||||| || || || || ||||| || || | || || Sbjct 1036 ATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATCGTGTCCG-AGCTCTCGAC 1094 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| |||| |||||| || || |||||||| Sbjct 1095 CTCGAGGGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1142 >seq56944 Length=8418 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | ||| | | ||| Sbjct 7633 CGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCG 7574 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || ||||| || || ||||| Sbjct 7573 TCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTG 7514 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| ||| || || || || || || || || | || || || | || | Sbjct 7513 TCCTGGATCTTCTGC-TTGACGTTCTCGATGGTGTC-GGAGCTCTCGACCTCGAGGGTGA 7456 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || |||| ||||| || || |||||||| Sbjct 7455 TCGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 7419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981066256306110