Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq52280 102 5e-17 seq41697 102 5e-17 seq58772 93.3 3e-14 seq56944 86.0 4e-12 seq49253 86.0 4e-12 seq43031 86.0 4e-12 seq56991 82.4 5e-11 seq53109 82.4 5e-11 >seq52280 Length=2070 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 1871 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGC 1812 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||| || | || | ||| || ||||| || ||| Sbjct 1811 TTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 1752 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | ||||||||| || || || || | ||||| || || || || Sbjct 1751 TGCTTCA-CGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 1693 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | || || || ||||||||||| ||||| Sbjct 1692 CAGGGTCTTCACGAAGATCTGCATTGTTGG 1663 >seq41697 Length=921 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| || || |||||||| |||| || ||||| |||| || | || Sbjct 26 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 85 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| || | |||||||| || | || | || || ||||| ||| ||| Sbjct 86 TTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTC 145 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | ||||||||| || || || || | ||||| || || || || Sbjct 146 TGCTTCA-CGTTCTCGATGGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 204 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | || || || ||||||||||| ||||| Sbjct 205 GAGGGTCTTCACGAAGATCTGCATTGTTGG 234 >seq58772 Length=3437 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 1825 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCAAGCTGC 1766 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | || || ||||| || ||| Sbjct 1765 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 1706 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | || ||||| || || || || | ||||| || || || || Sbjct 1705 TGCTTC-ACGTTCTCGATAGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 1647 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | ||| || || ||||||||||| ||||| Sbjct 1646 CAGCGTCTTGACGAAGATCTGCATTGTTGG 1617 >seq56944 Length=8418 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| || || || |||| || | || Sbjct 7165 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTCCTCGAGCTGC 7106 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||||| | || | ||||| ||||| ||| ||| Sbjct 7105 TTACCAGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTTC 7046 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | ||||||| || || || || | ||||| || || || || Sbjct 7045 TGCTTCA-CGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 6987 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTG-GTGTGTTTATCGC 33767 | || || || ||||||||||| |||| ||||| || ||| Sbjct 6986 CAGGGTCTTGACGAAGATCTGCATTGTTGCTTGTGTGTAGCGC 6944 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| || || || |||| || | || Sbjct 7393 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 7334 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||| || | || | ||| || ||||| || ||| Sbjct 7333 TTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 7274 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || | | | || | ||||||| || || || || | |||||||| ||||| || Sbjct 7273 TGCTTGA-CGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCGGT 7215 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 7214 CAGGGTCTTGACGAAGATCTGCAT 7191 >seq49253 Length=1508 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| |||||||| |||| || ||||| |||| || | || Sbjct 1342 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1283 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | ||| || ||||| || || Sbjct 1282 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTT 1223 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | |||||| || || || || | ||||| || || || || Sbjct 1222 TGCTTC-ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 1164 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 | || || || ||||||||||| |||||| Sbjct 1163 GAGGGTCTTCACGAAGATCTGCATGGTTGGT 1133 >seq43031 Length=7181 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || || ||||| |||| ||| ||||| |||| || | || Sbjct 13 TGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 72 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||||| | || | || || ||||| ||| || Sbjct 73 TTGCCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTT 132 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | |||||||| || || || || | ||||| || || || || Sbjct 133 TGCTTC-ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 191 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 | || || || ||||||||||| |||||| Sbjct 192 GAGGGTCTTCACGAAGATCTGCATTGTTGGT 222 >seq56991 Length=1928 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| || || |||| || | || || ||||| || Sbjct 1130 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 1189 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | || || ||||| || ||||| |||| | | Sbjct 1190 GATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 1248 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||||| || || || || | ||||| || || || || | || || | Sbjct 1249 TCTCGATCGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 1308 Query 33737 CAAAGATCTGCATAGTTGG----TGTGTTTATCGC 33767 | ||||||||||| ||||| ||||| || ||| Sbjct 1309 CGAAGATCTGCATTGTTGGCTGCTGTGTGTAGCGC 1343 >seq53109 Length=5902 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| || ||||| | || || | || || ||||| || Sbjct 4428 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCGAGCTGCTTACCGGCGAA 4369 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| | || | || || ||||| || ||||| || | | | Sbjct 4368 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTTA-CGT 4310 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||||| || || || || | |||||||| || || || | || || | Sbjct 4309 TCTCGATGGTGTCGCTCGACTCTACCTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTGA 4250 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 4249 CGAAGATCTGCATA 4236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328461672220800