Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq43031 87.8 2e-12 seq58772 82.4 7e-11 >seq43031 Length=7181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 25168 AAACAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCG 25226 || ||||| |||| | || || || || | ||||| || | ||||| |||| |||| Sbjct 223 AACCAACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCG 164 Query 25227 AAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGC 25286 | ||| ||| || |||||| | || || ||||| ||| || || ||||| || || | Sbjct 163 AGTCCAGCGACACGATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTC 104 Query 25287 CCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG 25346 |||||||||| | ||||| | || ||||| || ||||| || | | | || || Sbjct 103 CCGATCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCG 44 Query 25347 ATTACAATATTCAAAAAGAATCCAC 25371 | |||||||| || || || || || Sbjct 43 ACTACAATATCCAGAAGGAGTCGAC 19 >seq58772 Length=3437 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/202 (69%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 25171 CAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 ||||| |||| | || || || || | ||||| || | ||||| |||| ||||| Sbjct 1618 CAACAATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGT 1677 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | ||||||||||||| | || || || || || || || ||||| || || || | Sbjct 1678 CGAGCGATACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTG 1737 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 ||||||| | ||||| | || |||||| || || || || | | | | || ||| | Sbjct 1738 ATCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCGCCGACT 1797 Query 25350 ACAATATTCAAAAAGAATCCAC 25371 |||| || || || || ||||| Sbjct 1798 ACAACATCCAGAAGGAGTCCAC 1819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444757852996800