Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq57096 136 5e-27 seq41485 136 5e-27 seq41484 136 5e-27 seq53831 84.2 3e-11 >seq57096 Length=4203 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 3624 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 3683 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || |||||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 3684 GCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 3742 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 3743 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCT 3802 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 3803 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 3862 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 3863 CGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGT 3922 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 3923 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 3982 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | ||| || ||| || || || |||| Sbjct 3983 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 4042 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 | || || || ||||| || || || || || | | || || | ||| | ||| | Sbjct 4043 CCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 4101 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 4102 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 4161 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 4162 TTCTTGTACATCTCCCAGAT 4181 >seq41485 Length=1387 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 580 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 521 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || |||||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 520 GCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 462 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 461 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCT 402 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 401 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 342 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 341 CGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGT 282 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 281 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 222 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | ||| || ||| || || || |||| Sbjct 221 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 162 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 | || || || ||||| || || || || || | | || || | ||| | ||| | Sbjct 161 CCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 103 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 102 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 43 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 42 TTCTTGTACATCTCCCAGAT 23 >seq41484 Length=9505 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 354 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 413 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || |||||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 414 GCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 472 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 473 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCT 532 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 533 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 592 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 593 CGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGT 652 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 653 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 712 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | ||| || ||| || || || |||| Sbjct 713 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 772 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 | || || || ||||| || || || || || | | || || | ||| | ||| | Sbjct 773 CCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 831 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 832 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 891 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 892 TTCTTGTACATCTCCCAGAT 911 >seq53831 Length=10026 Score = 84.2 bits (92), Expect = 3e-11 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 || |||||||| || || || || || || ||||| || || |||||||| | | | | Sbjct 5532 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCACCTTGCTTCGGGCACTGGC 5473 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 |||||| || | |||||| || || ||| || || || ||||||||||| Sbjct 5472 ACCTCTTTCATGAAGCGACCCGCCAGGTTCTCTGCCACGATACCGTCGCTAGCGGCAAAG 5413 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 ||||||| || || || || || | ||| |||| || | | ||||| ||| Sbjct 5412 AATGCCAGAACGTGCTTGATGAAGTGCGGTTCGTCGGCCGTGAGAGATTGCCAGTGCTTG 5353 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 || || | | ||| || || || || ||||| || || ||||| ||||| |||||| Sbjct 5352 ATGTCATCACCGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTAC 5293 Query 40157 ATGTTCCATAT 40167 || | ||| || Sbjct 5292 ATCTCCCAGAT 5282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686389411083600