Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq57096 132 2e-25 seq41485 132 2e-25 seq41484 132 2e-25 seq58066 93.3 1e-13 >seq57096 Length=4203 Score = 132 bits (146), Expect = 2e-25 Identities = 319/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 4073 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 4014 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 4013 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 3957 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 3956 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 3898 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 3897 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAA 3838 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 3837 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 3779 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 3778 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 3720 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || |||||||| || |||| ||| || |||| |||||||| ||||| Sbjct 3719 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 3660 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 3659 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 3611 >seq41485 Length=1387 Score = 132 bits (146), Expect = 2e-25 Identities = 319/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 131 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 190 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 191 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 247 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 248 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 306 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 307 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAA 366 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 367 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 425 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 426 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 484 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || |||||||| || |||| ||| || |||| |||||||| ||||| Sbjct 485 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 544 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 545 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 593 >seq41484 Length=9505 Score = 132 bits (146), Expect = 2e-25 Identities = 319/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 803 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 744 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 743 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 687 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 686 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 628 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 627 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAA 568 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 567 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 509 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 508 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 450 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || |||||||| || |||| ||| || |||| |||||||| ||||| Sbjct 449 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 390 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 389 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 341 >seq58066 Length=10012 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 5585 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 5526 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 5525 GCCGCCAACGCGATCCAGTTCACCGT 5500 Score = 86.0 bits (94), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 5986 AGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 5927 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | | ||||| | | Sbjct 5926 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGTATCC 5867 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 5866 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 5835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587104994928050