Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq58066 129 7e-25 seq53831 109 7e-19 seq39829 98.7 1e-15 >seq58066 Length=10012 Score = 129 bits (142), Expect = 7e-25 Identities = 690/1090 (63%), Gaps = 22/1090 (2%) Strand=Plus/Plus Query 110627 GACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCA 110686 |||||||| || || || ||| || | ||||||| |||||| | | || || Sbjct 5800 GACCAGAGGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGACGACGGTGAAGTCG 5859 Query 110687 CCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTA 110746 || |||||| | | | ||||||||| || ||||| || |||||||| || || || Sbjct 5860 CCGGCGAGGATACGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTTG 5919 Query 110747 CCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGA 110806 |||| ||| || | ||| ||||| || ||||| || |||| | || ||| || ||| Sbjct 5920 CCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAGTTGCGCAGA 5979 Query 110807 CCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCT 110866 || | || |||| | ||| ||||||| | || | | | | Sbjct 5980 CCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCCCACCTGTCCGACGGCACGACG 6039 Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926 |||| | ||| ||| ||| || | ||||||||| || ||||| |||| | ||| Sbjct 6040 CCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTAG 6099 Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCG---CCTCCAGGGATGCGTGATACATGGTT 110983 | || | | | | || | || | ||| | |||||| |||| || ||||| Sbjct 6100 GTGCCCTCGACCTGCGCGAGCTC---GTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTC 6156 Query 110984 TCAAAGATACGAGCA-TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA 111042 || ||||| | || || | ||| ||| || || || | | || ||| | Sbjct 6157 TCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGAT 6215 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || || || || || || || || || || | || || || ||||| ||||| || || Sbjct 6216 CATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGA 6275 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || ||| ||||| || | || |||| || || ||| || || || Sbjct 6276 GTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTAAGGTTCTT 6332 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||| || | ||| || || || || || | | ||||| || || | | || Sbjct 6333 GGTGACCACCTTCACGACGTCGTGCAGCTTCTGGTGGTCAAACTCGCC-GT-TGGTGAT- 6389 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || |||| || || |||| || |||| ||||| || ||| ||| || || Sbjct 6390 GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGT 6446 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||||| | | || || || | ||| || || || || || | | || ||||| Sbjct 6447 GTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTT 6506 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||| |||||| || |||||||| |||||||||||||| || ||||| |||| || Sbjct 6507 GGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGA 6566 Query 111400 TTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC 111459 | ||| || || ||| | || ||| || | | | || || |||||| Sbjct 6567 CTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTG 6626 Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 111519 |||||| ||| | || ||||||| ||| || |||| | || || || || Sbjct 6627 CTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGC 6686 Query 111520 CTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 || || || || || || ||||| | || || ||| || ||||||||||| ||||| Sbjct 6687 CTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTC 6746 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 |||||||||||| | |||||||| | || ||| || | || ||||| Sbjct 6747 GGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CT 6805 Query 111640 TCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || | | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || Sbjct 6806 TCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAG 6865 Query 111699 ATCCCTTTCG 111708 ||||| || Sbjct 6866 CACCCTTGCG 6875 Score = 100 bits (110), Expect = 4e-16 Identities = 213/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || || |||| ||||| | || |||| | | || || | ||||| || Sbjct 7110 CCGATGCCGCCGGCTGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 7169 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 7170 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGTG 7229 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 7230 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 7289 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | ||||| || || ||||||| |||| Sbjct 7290 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCATG 7349 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 112133 | ||| || || | || |||| |||| || |||||| ||| ||| |||| Sbjct 7350 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGAGGTAGGAGCGCTCGAGGG 7407 Query 112134 TTTTGAGACCAAAGTA 112149 | |||| |||||||| Sbjct 7408 TCTTGAAGCCAAAGTA 7423 >seq53831 Length=10026 Score = 109 bits (120), Expect = 7e-19 Identities = 253/379 (67%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394 |||||||| | ||||||| || ||||| ||||||||||||||||| ||||||||| Sbjct 9539 TGGTTACTTTCGCTGTTGCATGCGTCCTTATAGAGCATGTAGGGCGTGCCCGTCTCCACT 9598 Query 111395 TGTGATTTGAGAATAGCCTTCCAAA---CATCGGC--GGCTGGTACAATGGCGTTGGCCC 111449 ||||| | ||| || || ||| | | | ||| | |||| | |||| ||| | Sbjct 9599 TGTGACTCGAGGATCGCGAACCACAGCTCCTGGGCCTTGATGGTGC---GGCG--GGCGC 9653 Query 111450 GTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGA 111509 | || ||| |||||| | |||||| | ||||||| || ||| |||| | Sbjct 9654 GGCCTTCCCGCTCGTAGCGGGCGTAGAGTTCCTCAAACTTGTCTCCCCAGACGTCCTGAA 9713 Query 111510 GACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCA 111569 |||| ||||| | || ||| ||| || | ||||| |||| || ||||||| Sbjct 9714 GACCCGGTGCTTCGTTGGGATCGAACAGCG--------CCACCAGCCTCGACGCGCTTCA 9765 Query 111570 TGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCAC 111629 |||| || || || | |||||||| | ||||| || | | || ||| || | | Sbjct 9766 TGAATAGATCGGGGACCCACAGGGCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGC 9825 Query 111630 CTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 111689 | ||||| | | || |||||||| | ||| |||| ||||| ||||| || |||| Sbjct 9826 CGTGGTTCTTCCTGAGATCGAGGAACTCGAAGATGTCCGAATGCCAGGGCTCCAGGTAGA 9885 Query 111690 CTGCGATAGATCCCTTTCG 111708 | || | |||||| || Sbjct 9886 TCGTGAAGGCTCCCTTGCG 9904 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/245 (68%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 ||||||||| ||| || ||||| || | | || || || || |||||| || || Sbjct 5901 GGCAAACTCTGCGTGCAGGCCCTCGTCGCCGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 5842 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| || ||||| | ||| | || | ||||| || || ||||||||||| Sbjct 5841 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 5782 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG-CGAGA----CTTTGCA 122832 ||||| || || || | | ||||| ||||| |||| | ||||| | ||| Sbjct 5781 GCCCTCGACGGTGGCGAATCCGACGAGGCGCTCGGCAAAGGTGTCGAGATCCTCCTTG-- 5724 Query 122833 TCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 122892 | | ||| ||| ||||| | |||||||||| | | || || || | |||||| Sbjct 5723 TTGATCCACCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTCTCGATGGCG 5664 Query 122893 TCAAA 122897 | ||| Sbjct 5663 TTAAA 5659 >seq39829 Length=6283 Score = 98.7 bits (108), Expect = 1e-15 Identities = 249/374 (67%), Gaps = 5/374 (1%) Strand=Plus/Minus Query 111336 GGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCT 111395 ||||||| || |||||| || ||||| ||||||||||||||||| |||||||| | Sbjct 4624 GGTTACTTTTGCGGTTGCAAGCGTCCTTATAGAGCATGTAGGGCGTGCCCGTCTCGACTT 4565 Query 111396 GTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCC 111454 |||| | ||| || || ||| | || ||| | | | ||| |||| || || Sbjct 4564 GTGACTCGAGGATCGCGAACCACAGCTCCTGGGCCTTGATAGT-GCGGCGGCCACGGCCT 4506 Query 111455 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCT 111514 ||| |||||| |||||||| | || |||| || ||| | || |||| Sbjct 4505 TCCCTCTCGTAGCGGGTGTAGAGTCCCTCGAACTTATCTCCCCAGACTTCCTGAAGACTC 4446 Query 111515 GGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAA 111574 ||||| | || ||| ||| || ||||| | ||||| ||||||| ||||||||||| Sbjct 4445 GGTGCTTCGTTGGGATCGAACAGCGACCAGTAGCCACCAGCCTCAACGCGCTTCATGAAT 4386 Query 111575 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 111634 || || || | ||| |||| | ||||| || | | || | || || | || ||| Sbjct 4385 AGATCGGGGACCCATAGGGTGTAGAAGAGGTCGC--GAGCGCGGTTC-TCCTTGCCGTGG 4329 Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 | | | | |||||||| | ||| ||| ||||| ||||| || |||| | | Sbjct 4328 TGCTTTTTGAGATTGAGGAACTCAAAGATGTCCAAATGCCAGGGCTCCAGGTAGATCGTG 4269 Query 111695 ATAGATCCCTTTCG 111708 | | ||||||||| Sbjct 4268 AAGGCTCCCTTTCG 4255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627557129304000