Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq58066 167 3e-36 seq53831 134 2e-26 seq57096 104 3e-17 seq41485 104 3e-17 seq41484 104 3e-17 >seq58066 Length=10012 Score = 167 bits (184), Expect = 3e-36 Identities = 651/1010 (64%), Gaps = 24/1010 (2%) Strand=Plus/Minus Query 104597 CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 || ||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 6875 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 6816 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 6815 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 6756 Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 |||||||| || || ||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 6755 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 6696 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 || || |||| || || || | ||| | ||| ||||||| || | ||| Sbjct 6695 CCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 6636 Query 104837 AAGTACGAGGAAGAAGGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 104892 |||||| | || || || ||| | ||| ||| | || ||| || ||||| Sbjct 6635 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAGCTGTGGTT 6580 Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 || || ||| |||| || | |||||| || || || |||||||| ||||| |||||||| Sbjct 6579 CGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTG 6520 Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012 ||| ||| || || || | | || ||| || || || || || || || Sbjct 6519 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGA 6460 Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 || | | | || || ||| ||| ||||| ||||| || || |||| || Sbjct 6459 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCT 6400 Query 105073 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 105132 ||||||| | ||| | | | ||||| | | || || ||||| || Sbjct 6399 GCCCAAGTTCAT--CACCAACGGCGA----GTTTGACCACCAGAAGCTGCACGACGTCGT 6346 Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 105189 ||| |||||||| ||||| |||| || || || | || | |||||||| || Sbjct 6345 GAAGGTGGTCACCAAGAACCTTAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 6286 Query 105190 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGC 105249 | || || || || || ||| | ||| | || || || |||| || ||||| || || Sbjct 6285 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGC 6229 Query 105250 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 105308 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 6228 CGACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 6169 Query 105309 CGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGG 105368 ||| ||| || |||||||| || ||||||| || | || ||| | || ||| Sbjct 6168 CGC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGG 6110 Query 105369 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTT 105427 | || || | || | |||| ||||| || || || || |||||| ||| || Sbjct 6109 TCGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAGCCC 6051 Query 105428 GATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATC 105487 || | |||| | | | | | | ||||||| | ||| | |||| Sbjct 6050 GACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATC 5991 Query 105488 AAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCA 105547 || | ||||| || ||| |||||| |||| || ||||| || ||||| ||| | Sbjct 5990 GCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCG 5931 Query 105548 CAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 5930 CAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 5881 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||||||||||||| | || ||| |||| | || Sbjct 7357 CCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCCCCGCCGTG 7298 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 7297 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 7238 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| || ||| ||||||||| Sbjct 7237 AACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 7178 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | |||| || | ||||| |||| || || Sbjct 7177 TCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCCGGC 7118 Query 104462 GGTATTGG 104469 || || || Sbjct 7117 GGCATCGG 7110 >seq53831 Length=10026 Score = 134 bits (148), Expect = 2e-26 Identities = 180/248 (73%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 94711 CAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATG 94770 || |||||| | |||||| | || || || | | | ||||| || || ||||| ||| Sbjct 5653 CACCTCTTTAACGCCATCGAGACGGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCCATG 5712 Query 94771 AAGTGGTTTGATACAAAG--TCGCGTT-CCTTTGCTGAGCGACTCTTCGCATTTGCGTGT 94827 |||| | | | || || || ||||||| ||||| ||| ||| ||| || Sbjct 5713 CGGTGGATCAACAAGGAGGATCTCGACACCTTTGCCGAGCGCCTCGTCGGATTCGCCACC 5772 Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| || |||||||| | || | ||||||||||| || ||| Sbjct 5773 GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAACGCGGT 5832 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 94947 |||||||| || ||| ||||||||||||||| ||| | |||||||| || ||| | Sbjct 5833 CTCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCGGCGACGAGGGCCTGCACGCA 5892 Query 94948 GAGTTTGC 94955 |||||||| Sbjct 5893 GAGTTTGC 5900 >seq57096 Length=4203 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTT 94800 |||| ||||| || || ||||| ||||||||| | | | || |||| |||| Sbjct 3841 TCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTC 3783 Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || ||||| ||| ||| ||| || || ||||| ||||||||||| || ||||||| Sbjct 3782 GCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC 3723 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 | || | |||||||||||||| || |||||||| || ||| |||| |||||| | Sbjct 3722 TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATG 3663 Query 94921 ATCTCTCGTGACGAGGGACTCCAC 94944 ||| || || ||||| |||||| Sbjct 3662 ATCAGCCGCGATGAGGGCCTCCAC 3639 >seq41485 Length=1387 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTT 94800 |||| ||||| || || ||||| ||||||||| | | | || |||| |||| Sbjct 363 TCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTC 421 Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || ||||| ||| ||| ||| || || ||||| ||||||||||| || ||||||| Sbjct 422 GCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC 481 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 | || | |||||||||||||| || |||||||| || ||| |||| |||||| | Sbjct 482 TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATG 541 Query 94921 ATCTCTCGTGACGAGGGACTCCAC 94944 ||| || || ||||| |||||| Sbjct 542 ATCAGCCGCGATGAGGGCCTCCAC 565 >seq41484 Length=9505 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTT 94800 |||| ||||| || || ||||| ||||||||| | | | || |||| |||| Sbjct 571 TCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTC 513 Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || ||||| ||| ||| ||| || || ||||| ||||||||||| || ||||||| Sbjct 512 GCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC 453 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 | || | |||||||||||||| || |||||||| || ||| |||| |||||| | Sbjct 452 TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATG 393 Query 94921 ATCTCTCGTGACGAGGGACTCCAC 94944 ||| || || ||||| |||||| Sbjct 392 ATCAGCCGCGATGAGGGCCTCCAC 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582819781927600