Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq60261 107 6e-18 seq56944 105 2e-17 seq49253 102 2e-16 seq56461 89.7 2e-12 seq54642 89.7 2e-12 seq60216 87.8 5e-12 seq58772 86.0 2e-11 seq56991 86.0 2e-11 seq54650 84.2 7e-11 >seq60261 Length=7311 Score = 107 bits (118), Expect = 6e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || || ||||||||||| || || || || || || | Sbjct 976 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCC 1035 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || || || ||||| || || |||||||| ||||| Sbjct 1036 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 1095 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || |||| ||||||| || || Sbjct 1096 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCAGATGACTCGACC 1155 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| || || || || || |||||||| Sbjct 1156 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1202 >seq56944 Length=8418 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || ||||| ||||| || || || || || || | | || || || || Sbjct 7174 AGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTCC 7115 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| || || ||||||||||| || || ||||| || ||| Sbjct 7114 TCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCC 7055 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || || | || || | || || || || || | ||| Sbjct 7054 TGAATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTC 6995 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || || || || || ||||||||| Sbjct 6994 TTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 6962 Score = 95.1 bits (104), Expect = 4e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || ||||| || || || ||||| || || || || || || | Sbjct 7645 CCACCACGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 7586 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || ||||||||||| || || ||||| || |||||| Sbjct 7585 AGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGA 7526 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || || | || || || || Sbjct 7525 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCGACC 7466 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| || || || || || |||||||| Sbjct 7465 TCGAGGGTGATCGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 7419 >seq49253 Length=1508 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || || ||||| ||||| || || || || | | || || || || Sbjct 1351 AGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1292 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || || ||||||||||| ||||| || || || ||| Sbjct 1291 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 1232 Query 140646 TGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 || || ||| || || || || || |||| || || | || || || || || | || Sbjct 1231 TGGATCTTTTGC-TTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGT 1173 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || || || || |||||||| Sbjct 1172 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1140 >seq56461 Length=6508 Score = 89.7 bits (98), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 786 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 727 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTTATT 423853 ||||||||||| ||||||||||| ||| || || Sbjct 726 CTCGTGGGTTCGAACCCCACTCCAGGCAATTTTT 693 >seq54642 Length=6489 Score = 89.7 bits (98), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 5704 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 5763 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTTATT 423853 ||||||||||| ||||||||||| ||| || || Sbjct 5764 CTCGTGGGTTCGAACCCCACTCCAGGCAATTTTT 5797 >seq60216 Length=3196 Score = 87.8 bits (96), Expect = 5e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || ||||| ||||| || || || || || || | | || || || || Sbjct 1841 AGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGGCCGTCC 1900 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || || ||||||||||| || || || || || ||| Sbjct 1901 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 1960 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || |||| || || | || || || || || | ||| Sbjct 1961 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTC 2020 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || || || || |||||| Sbjct 2021 TTGCCAGTGAGGGTCTTCACGAAGATTTGCATT 2053 >seq58772 Length=3437 Score = 86.0 bits (94), Expect = 2e-11 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || || ||||| || || || || || || Sbjct 1853 CATGCCGCCACGAAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 1794 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || ||||| || || || || ||||| || || ||||||||||| Sbjct 1793 GGCGAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGG 1734 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || | ||| | || Sbjct 1733 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATAGTATCGCTCGACTC 1674 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| ||||| || || || || || ||||||||| Sbjct 1673 GACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATT 1622 >seq56991 Length=1928 Score = 86.0 bits (94), Expect = 2e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || || || || ||||| || || || || || |||| Sbjct 867 CCACCACGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCC 926 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || || || ||||| || || ||||||||||| || Sbjct 927 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGCGGG 986 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || || | || || || || Sbjct 987 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGCTCTCGACC 1046 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| || || || || || |||||||| Sbjct 1047 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1093 >seq54650 Length=1408 Score = 84.2 bits (92), Expect = 7e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 1405 CATACCACCACGGAGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 1346 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| ||||| ||||| ||||| Sbjct 1345 GGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGG 1286 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || | || | || Sbjct 1285 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTCGACTC 1226 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || || || || ||||| Sbjct 1225 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514080035223470