Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq53469 87.8 2e-12 seq53468 87.8 2e-12 seq53467 87.8 2e-12 >seq53469 Length=15922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 104147 CTACCAGGGGGCCACCGTGCTGGCGCCCAAGACCTCCTTCTACAACACGCCCGTCGCCGT 104206 |||| |||| |||| |||| | || |||||||| ||| |||| || |||| ||||| Sbjct 10667 CTACAAGGGCGCCATCGTGATTGCCCCCAAGACGGCCTACTACGACGTGCCCATCGCCAC 10726 Query 104207 GCTGGACTTCGCCAGCCTCTACCCCAGCATCATCCAGGCCTACAACCTCTGCTACTCCAC 104266 || || |||||| || |||||| |||||| ||| ||||||||||||||||||| Sbjct 10727 CCTCGATTTCGCCTCGCTGTACCCCTCCATCATGATTGCCCACAACCTCTGCTACTCCAC 10786 Query 104267 CCT 104269 || Sbjct 10787 GCT 10789 >seq53468 Length=15938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 104147 CTACCAGGGGGCCACCGTGCTGGCGCCCAAGACCTCCTTCTACAACACGCCCGTCGCCGT 104206 |||| |||| |||| |||| | || |||||||| ||| |||| || |||| ||||| Sbjct 10667 CTACAAGGGCGCCATCGTGATTGCCCCCAAGACGGCCTACTACGACGTGCCCATCGCCAC 10726 Query 104207 GCTGGACTTCGCCAGCCTCTACCCCAGCATCATCCAGGCCTACAACCTCTGCTACTCCAC 104266 || || |||||| || |||||| |||||| ||| ||||||||||||||||||| Sbjct 10727 CCTCGATTTCGCCTCGCTGTACCCCTCCATCATGATTGCCCACAACCTCTGCTACTCCAC 10786 Query 104267 CCT 104269 || Sbjct 10787 GCT 10789 >seq53467 Length=12679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 104147 CTACCAGGGGGCCACCGTGCTGGCGCCCAAGACCTCCTTCTACAACACGCCCGTCGCCGT 104206 |||| |||| |||| |||| | || |||||||| ||| |||| || |||| ||||| Sbjct 1838 CTACAAGGGCGCCATCGTGATTGCCCCCAAGACGGCCTACTACGACGTGCCCATCGCCAC 1779 Query 104207 GCTGGACTTCGCCAGCCTCTACCCCAGCATCATCCAGGCCTACAACCTCTGCTACTCCAC 104266 || || |||||| || |||||| |||||| ||| ||||||||||||||||||| Sbjct 1778 CCTCGATTTCGCCTCGCTGTACCCCTCCATCATGATTGCCCACAACCTCTGCTACTCCAC 1719 Query 104267 CCT 104269 || Sbjct 1718 GCT 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658241110822400