Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq60216 109 3e-19 seq60261 105 4e-18 seq56944 98.7 6e-16 seq58772 93.3 3e-14 seq56991 93.3 3e-14 seq41697 91.5 9e-14 seq49253 89.7 3e-13 seq52280 84.2 1e-11 seq54650 82.4 5e-11 >seq60216 Length=3196 Score = 109 bits (120), Expect = 3e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 912 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 971 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || |||||||| || | ||||| |||||||| Sbjct 972 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGG 1031 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||||| || ||| | || ||||| ||||| Sbjct 1032 GGGGATGCCCTCCTTGTCCTGAATCTTTTG-CTTCACGTTCTCGATCGTGTCCGAGCTCT 1090 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| ||||| || ||||| | ||| || || || |||||||| Sbjct 1091 CGACCTCGAGGGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1142 >seq60261 Length=7311 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | || || ||| |||||| || ||||| || || | Sbjct 1203 GCCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 1262 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | |||||| ||||| || || Sbjct 1263 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGG 1322 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||||||| || ||| | |||||||| |||||| | Sbjct 1323 GATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATTGTGTCCGAGCTCTCGA 1381 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || ||||| | ||| || || || ||||||||| Sbjct 1382 CCTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 1431 >seq56944 Length=8418 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||| || | || | ||||| ||| |||||| || ||||| || || Sbjct 7649 GTTGCCACCACGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 7590 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || || ||||| || | ||||| ||||| || Sbjct 7589 GGCCAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGG 7530 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| ||||| Sbjct 7529 AGGAATACCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTCTCGATGGTGTCGGAGCTCT 7471 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | ||| ||||| |||||||| | || || || || ||||||||| Sbjct 7470 CGACCTCGAGGGTGATCGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCATG 7418 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 7393 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 7334 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 |||||||| || || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 7333 TTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 7274 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| ||| || || | ||| ||||| |||||||| Sbjct 7273 TG-CTTGACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCGGT 7215 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || || || || ||||||||| Sbjct 7214 CAGGGTCTTGACGAAGATCTGCATG 7190 >seq58772 Length=3437 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||| || | || | ||||| ||| |||||| || ||||| || || Sbjct 2309 GTTGCCACCACGAAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 2250 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| ||||| || || ||||| || || | |||||| || || || Sbjct 2249 GGCCAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGG 2190 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| ||||| Sbjct 2189 AGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATAGTGTCGGAGCTCT 2131 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | ||| || || || ||||| | || || || || ||||||||| Sbjct 2130 CGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATG 2078 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/235 (70%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | || | ||||| ||| |||||| || ||||| || || | Sbjct 1850 GCCGCCACGAAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 1791 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| ||||| || || ||||| || || | ||||| || || || || Sbjct 1790 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 1731 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||||| || || ||| | || || || ||| ||| Sbjct 1730 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATAGTATCGCTCG-ACTCG 1673 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 || || | ||| || || || ||||| | ||| || || || ||||||| ||||| Sbjct 1672 ACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATTGTTG 1618 >seq56991 Length=1928 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | || || | ||| | ||||| || |||||| || ||||| || || Sbjct 863 GTTGCCACCACGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC 922 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || ||||| || || | ||||| || || || Sbjct 923 AGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGG 982 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 ||| | ||||||||||| |||||| || || ||| | || ||||| ||||| Sbjct 983 CGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCCGAGCTCT 1041 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | ||| || || || ||||| | ||| ||||| || ||||||||| Sbjct 1042 CGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1094 >seq41697 Length=921 Score = 91.5 bits (100), Expect = 9e-14 Identities = 163/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||||||| |||||| || ||||| || || | Sbjct 1 GCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 60 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || |||||||| || | ||||| ||||| || || Sbjct 61 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGG 120 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||| || || ||| | || ||||| | ||| | Sbjct 121 GATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCGATGGTGTCGCTGGACTCAA 179 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 | || | ||| || || || ||||| | || ||||| || ||||||| ||||| Sbjct 180 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTG 233 >seq49253 Length=1508 Score = 89.7 bits (98), Expect = 3e-13 Identities = 165/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| ||| ||||||||| ||||| || || | Sbjct 1367 GCCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGC 1308 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| || || || || Sbjct 1307 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 1248 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||||||| || ||| | || ||||| ||| | Sbjct 1247 AATACCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATCGTGTCGGACGACTCGA 1189 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGATTG 34714 | || | ||| || || || ||||| | || ||||| || |||||||| |||| ||| Sbjct 1188 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGGTTGGTTG 1131 >seq52280 Length=2070 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | || ||||| |||||| || ||||| || || | Sbjct 1895 CCGCCACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 1836 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | |||||| ||||| || || Sbjct 1835 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGA 1776 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| ||| ||| | Sbjct 1775 ATACCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCGCTCG-ACTCAA 1718 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 | || | ||| || || || || || | || ||||| || ||||||| ||||| Sbjct 1717 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTGTTG 1664 >seq54650 Length=1408 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 1377 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 1318 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 1317 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 1258 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 || || ||| | || ||||| ||| ||| || || | ||| || || || || | Sbjct 1257 TG-CTTCACGTTCTCGATGGTGTCGCTCG-ACTCAACCTCGAGGGTGATGGTCTTGCCAG 1200 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTT 34709 | | || ||||| || || |||||||| Sbjct 1199 TCAGGGTCTTCACGAAGATTTGCATGTT 1172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314497574454170