Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq41697 118 7e-22 seq60216 107 1e-18 seq58772 104 2e-17 seq60261 102 6e-17 seq15432 82.4 5e-11 >seq41697 Length=921 Score = 118 bits (130), Expect = 7e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || |||||||| || || || ||||| ||||| ||||| |||| Sbjct 229 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCAG 170 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||| ||||| || || | || || || || Sbjct 169 CGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 110 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || |||| ||||| | | ||| ||||| Sbjct 109 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 50 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 49 CATCCAGAAGGAGTCCAC 32 >seq60216 Length=3196 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || |||||||| ||||| || || | || Sbjct 1142 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACCCTCGAGGTCGAGAGCTCG 1083 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| ||| ||||| || || | || || || || Sbjct 1082 GACACGATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 1023 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| ||||| | | ||| |||||| Sbjct 1022 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 963 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 962 ATCCAGAAGGAGTCCAC 946 >seq58772 Length=3437 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || | Sbjct 1851 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTCC 1910 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 1911 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1970 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| |||||| | | ||| |||||| Sbjct 1971 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGGCCGACTACAAC 2030 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2031 ATCCAGAAGGAGTCGAC 2047 >seq60261 Length=7311 Score = 102 bits (112), Expect = 6e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || | Sbjct 1703 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCC 1644 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||| ||||| || || | ||||| ||||| Sbjct 1643 GACACCATTGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGATCAG 1584 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 ||||| | || || |||||||| || || || |||| ||||| Sbjct 1583 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCAC 1540 >seq15432 Length=160 Score = 82.4 bits (90), Expect = 5e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| || || |||| Sbjct 23 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTCTCGAGGTCGAGTCCAGC 82 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || || || || ||||| || ||| | || || || || Sbjct 83 GATACTATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 142 Query 23731 CAGCGTTTAATATTTGCC 23748 |||||| | || || ||| Sbjct 143 CAGCGTCTCATCTTCGCC 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337760411928920