Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq57096 104 3e-17 seq41485 104 3e-17 seq41484 104 3e-17 >seq57096 Length=4203 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 3625 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3684 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || ||||| || |||||||| || || | || ||| | || || ||||| Sbjct 3685 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3743 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 3744 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 3803 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| || | |||| || || || || Sbjct 3804 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3863 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 3864 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 3923 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 3924 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3983 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 3984 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 4043 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 4044 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 4103 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 4104 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 4163 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 4164 CTTGTACATCTCCCAGAT 4181 >seq41485 Length=1387 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 579 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 520 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || ||||| || |||||||| || || | || ||| | || || ||||| Sbjct 519 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 461 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 460 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 401 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| || | |||| || || || || Sbjct 400 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 341 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 340 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 281 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 280 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 221 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 220 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 161 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 160 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 101 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 100 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 41 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 40 CTTGTACATCTCCCAGAT 23 >seq41484 Length=9505 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 355 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 414 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || ||||| || |||||||| || || | || ||| | || || ||||| Sbjct 415 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 473 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 474 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 533 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| || | |||| || || || || Sbjct 534 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 593 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 594 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 653 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 654 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 713 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 714 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 773 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 774 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 833 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 834 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 893 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 894 CTTGTACATCTCCCAGAT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694143543553600