Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq51746 89.7 2e-13 seq51745 89.7 2e-13 >seq51746 Length=6271 Score = 89.7 bits (98), Expect = 2e-13 Identities = 177/257 (69%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 31022 GCCTTAATGACCACACCGACGCCCT-TGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGAT 31080 |||| | ||| ||||||||||||| ||||| ||| || | | |||| |||| Sbjct 5413 GCCTCTACGACGACACCGACGCCCTGTGGCTGG-AGGACGTCCATGATGGCGTTGCCGAT 5471 Query 31081 CTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGA 31140 ||| | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 5472 CTGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGC 5531 Query 31141 CAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGA 31199 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| Sbjct 5532 GAGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGT 5590 Query 31200 AGATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCA 31259 ||| || | ||| |||||||| | ||| ||| | |||||||||||| | |||| Sbjct 5591 AGAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCA 5650 Query 31260 TCTGGTCATGCTTCTCC 31276 | | || || |||||| Sbjct 5651 TGTCCTCGTGATTCTCC 5667 >seq51745 Length=6348 Score = 89.7 bits (98), Expect = 2e-13 Identities = 177/257 (69%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 31022 GCCTTAATGACCACACCGACGCCCT-TGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGAT 31080 |||| | ||| ||||||||||||| ||||| ||| || | | |||| |||| Sbjct 5490 GCCTCTACGACGACACCGACGCCCTGTGGCTGG-AGGACGTCCATGATGGCGTTGCCGAT 5548 Query 31081 CTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGA 31140 ||| | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 5549 CTGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGC 5608 Query 31141 CAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGA 31199 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| Sbjct 5609 GAGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGT 5667 Query 31200 AGATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCA 31259 ||| || | ||| |||||||| | ||| ||| | |||||||||||| | |||| Sbjct 5668 AGAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCA 5727 Query 31260 TCTGGTCATGCTTCTCC 31276 | | || || |||||| Sbjct 5728 TGTCCTCGTGATTCTCC 5744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187155066368640