Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq59610 120 3e-22 >seq59610 Length=50575 Score = 120 bits (132), Expect = 3e-22 Identities = 301/458 (66%), Gaps = 12/458 (3%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| || | |||||||| | |||||| | |||||| || | Sbjct 5362 AGGCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCG 5303 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 5302 AGGCCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 5243 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG--------- 17131 || || |||||||||| || || |||| | || ||||| | ||| || Sbjct 5242 AAGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCC 5183 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 || ||||| ||||| ||| | |||| ||||| || | ||| | | || || Sbjct 5182 TCCTTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTC 5126 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || ||||| || | || || || |||| | | || || |||||||| Sbjct 5125 TCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGG 5066 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || |||||| |||||||| |||||||| ||||| || || || ||||| ||||| || Sbjct 5065 AGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGC 5006 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | | || || ||| ||| || | || || || ||| |||||||||| Sbjct 5005 GCCTCGGGCACCTGGACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCG 4946 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || ||||| || |||| | ||||| ||||| Sbjct 4945 TCGCTGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAA 4908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517139093808480