Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq60409 82.4 9e-11 seq59744 82.4 9e-11 seq52186 82.4 9e-11 >seq60409 Length=3778 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 145761 GTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCC 145820 ||| ||||||| | |||||||||||||||| || |||||||| || || ||||| || Sbjct 3545 GTGAGCGACCAAGCAGGTCAGCAGGGAGTACGACGCAATGTTGAATGGTACGCCCAGTCC 3604 Query 145821 CATGTCCCCCGAGCGCTGGTACAGCTGG 145848 |||||| | |||||||| |||| |||| Sbjct 3605 CATGTCAGCAGAGCGCTGATACATCTGG 3632 >seq59744 Length=3441 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 145761 GTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCC 145820 ||| ||||||| | |||||||||||||||| || |||||||| || || ||||| || Sbjct 3208 GTGAGCGACCAAGCAGGTCAGCAGGGAGTACGACGCAATGTTGAATGGTACGCCCAGTCC 3267 Query 145821 CATGTCCCCCGAGCGCTGGTACAGCTGG 145848 |||||| | |||||||| |||| |||| Sbjct 3268 CATGTCAGCAGAGCGCTGATACATCTGG 3295 >seq52186 Length=2163 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 145761 GTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCC 145820 ||| ||||||| | |||||||||||||||| || |||||||| || || ||||| || Sbjct 2035 GTGAGCGACCAAGCAGGTCAGCAGGGAGTACGACGCAATGTTGAATGGTACGCCCAGTCC 1976 Query 145821 CATGTCCCCCGAGCGCTGGTACAGCTGG 145848 |||||| | |||||||| |||| |||| Sbjct 1975 CATGTCAGCAGAGCGCTGATACATCTGG 1948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589613324177440