Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq60463 96.9 7e-15 >seq60463 Length=11997 Score = 96.9 bits (106), Expect = 7e-15 Identities = 307/469 (65%), Gaps = 13/469 (3%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 10888 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 10829 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 10828 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 10769 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | |||| | |||||| ||||| || | |||||| ||| |||| ||| Sbjct 10768 TGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGGTCGCTCTTTTGC 10709 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | || | || || | || || || ||||| | || Sbjct 10708 CCCAACGAAGCCCCCGGTCTGTTTGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 10651 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 10650 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCG 10591 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| || || | Sbjct 10590 CCA---TCCTCGAGTCTCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGATGCCT 10534 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||||| ||||| || || || | | Sbjct 10533 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGG 10474 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||| ||||||||||| Sbjct 10473 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 10425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072901925435648