Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq59610 120 4e-22 >seq59610 Length=50575 Score = 120 bits (132), Expect = 4e-22 Identities = 371/564 (66%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 5359 CAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 5300 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 5299 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 5241 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 36332 || || || || || || || | || || | ||| || | |||||| | | | Sbjct 5240 GATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCCTC 5181 Query 36333 ---GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 36387 || |||||||| ||||| ||||||||||| || || | |||| ||||| || Sbjct 5180 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGAT 5121 Query 36388 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 || ||||| || || || || || || || || || || | || Sbjct 5120 GGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 5061 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 ||||| || || || ||||| || ||||| ||||| || |||||||| || | ||||| Sbjct 5060 GTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTC 5001 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 || | ||| || || | || || | || | || || ||| || ||||| || Sbjct 5000 GGGCACCTGGACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGCT 4941 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG-TTAGTTTAT 36626 ||| || || || |||| || || || || || | | ||| | | || | || | Sbjct 4940 GGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGCTCAGCGATT 4882 Query 36627 TCCAATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 ||| | || || || || | | ||| ||||| || | ||||| || || ||||| Sbjct 4881 CCCAGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCG 4823 Query 36686 GCCTTTTTATACATATTCCAGATG 36709 ||||| || ||||| | ||||||| Sbjct 4822 GCCTTCTTGTACATCTCCCAGATG 4799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657655838174240