Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq59610 132 6e-26 >seq59610 Length=50575 Score = 132 bits (146), Expect = 6e-26 Identities = 373/563 (66%), Gaps = 15/563 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 5359 CAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 5300 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 5299 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 5241 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | || || | ||| || | |||||| | | | Sbjct 5240 GATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCCTC 5181 Query 42240 ---GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 || |||||||| ||||| ||||||||||| || || | |||| || || || Sbjct 5180 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGAT 5121 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 ||| ||||| || || || || || || || || ||||| | || Sbjct 5120 GGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 5061 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||| || || || ||||| || ||||| || || || |||||||| || | ||||| Sbjct 5060 GTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTC 5001 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 || ||||| || || | || || | || | || ||| ||| || ||||| || Sbjct 5000 GGGCACCTGGACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGCT 4941 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534 ||| || || || |||| || || || || || | | |||| || || | | ||| Sbjct 4940 GGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGCTCAGCGATT 4882 Query 42535 -CCAATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 ||| | || || || || | | ||| ||||| || ||||||| || || || || Sbjct 4881 CCCAGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCG 4823 Query 42593 GCCTTTTTATACATATTCCAGAT 42615 ||||| || ||||| | |||||| Sbjct 4822 GCCTTCTTGTACATCTCCCAGAT 4800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670612053715360