Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq61614 93.3 4e-14 seq49488 91.5 1e-13 seq40960 91.5 1e-13 seq59302 89.7 5e-13 seq62774 87.8 2e-12 seq60456 87.8 2e-12 >seq61614 Length=59386 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | || | || || || || || |||||||| ||| | Sbjct 2505 CCGCCGCGCAGACGAAGAACGAGRTGGAGMGTSGACTCCTTCTGGATGTTGTAGTCGGCC 2564 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| ||||| || || || || |||| || || |||||||||||||| Sbjct 2565 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 2624 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || || | | || | |||||| | | || || Sbjct 2625 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTCGACTCGACC 2684 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||||||| || | || || ||||| || |||||| Sbjct 2685 TCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATA 2732 >seq49488 Length=478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || ||| Sbjct 279 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 220 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||||||||| || || || || ||||| || ||||| || Sbjct 219 GCGAAGATGAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 160 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || ||||| | || | |||||||| || | || Sbjct 159 ACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTC 100 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 99 TTGACGAAGATCTGCATA 82 >seq40960 Length=530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || ||| Sbjct 291 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 350 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || ||||||||||| || |||||||| ||||| || || || || Sbjct 351 GCGAAGATGAGGCGCTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 410 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| | || ||||| | || | |||||||| |||| || Sbjct 411 ACGTTCTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATAGTCTTGCCCGTCAGGGTC 470 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 471 TTGACGAAGATCTGCATA 488 >seq59302 Length=3966 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || || | ||| ||||| || |||||| Sbjct 1942 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCA 1883 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || || ||||| || || || ||||| || ||||| || || || || Sbjct 1882 GCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1823 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || ||||| | || | ||||||||||||| || Sbjct 1822 ACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTAATGGTCTTGCCGGTCAGCGTC 1763 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 1762 TTGACGAAGATCTGCAT 1746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 2170 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 2111 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||||||||| ||||| || ||||| || || || || Sbjct 2110 GCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 2051 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | || | ||||||||||||| || Sbjct 2050 ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTC 1991 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 1990 TTGACGAAGATCTGCATA 1973 >seq62774 Length=14773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || || || Sbjct 8864 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 8805 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || ||||||||||| || ||||| || ||||| || || || || Sbjct 8804 GCGAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 8745 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | |||||||||||||| || Sbjct 8744 ACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTCAGGGTC 8685 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 8684 TTGACGAAGATCTGCATA 8667 >seq60456 Length=68670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || ||| Sbjct 47396 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 47337 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| |||||||| || || || || || || || || || Sbjct 47336 GCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTCTGCTTG 47277 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || ||||| | || | ||||||||||| | || Sbjct 47276 ACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 47217 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 47216 TTCACGAAGATCTGCATA 47199 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || || | ||| ||||| || || || Sbjct 46940 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 46881 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || |||||||| || || |||||||| ||||| || || || || Sbjct 46880 GCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 46821 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | |||||||||||||| || Sbjct 46820 ACGTTCTCAATGGTGTCGCTCGACTCGACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTC 46761 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 46760 TTCACGAAGATCTGCATA 46743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506616165539520