Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq60463 181 2e-40 seq59610 174 2e-38 seq46804 104 3e-17 >seq60463 Length=11997 Score = 181 bits (200), Expect = 2e-40 Identities = 330/482 (68%), Gaps = 6/482 (1%) Strand=Plus/Minus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 || ||| | ||| ||||| | || || |||||||||||| | |||||||| |||| || Sbjct 10882 GGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTCGACCTG 10823 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 || ||| ||| || ||| || ||| | || | || || | || ||| | Sbjct 10822 AAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTGTGGATT 10763 Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGAC 97076 || ||| | |||||||||||||| | || ||| ||||| || | |||||| || Sbjct 10762 CCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGGTCGCTCTTTTGCCCCAAC 10703 Query 97077 TCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTAC 97136 | |||||||||| || | |||||| | ||||| |||| |||||| | |||| Sbjct 10702 GAAGCCCCCGGTCTGTTTGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAGCGCTAC 10643 Query 97137 GAGCAAGAGGGCCGATACGTGAGACG---AGTCGATGCACGAGAACTGTGGAAGGCCATC 97193 ||||| |||||||| || | | || ||| | || | || |||||| |||||| Sbjct 10642 GAGCAGGAGGGCCG---CGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCGCCATC 10586 Query 97194 GTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGC 97253 | | ||||| | ||||| || || || ||||| || ||||||||| || || || Sbjct 10585 CTCGAGTCTCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGATGCCTGCAACGGC 10526 Query 97254 AACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTA 97313 || |||||| | ||| | ||||||||| || || || ||||||||||| | || Sbjct 10525 AAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAGGTCGTC 10466 Query 97314 GAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAG 97373 ||||| | || || |||||| ||| || ||| ||||| ||| || ||||||||| Sbjct 10465 CAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTGCCCAAG 10406 Query 97374 TT 97375 || Sbjct 10405 TT 10404 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||| | ||| | | | | | ||||| ||||| || || | Sbjct 9730 TACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCA-TCATCGACATGGCCGCTGATCGCTC 9672 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | | Sbjct 9671 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTCGCCAA 9612 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || ||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| || Sbjct 9611 GCTCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCT 9552 >seq59610 Length=50575 Score = 174 bits (192), Expect = 2e-38 Identities = 405/597 (68%), Gaps = 33/597 (6%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 4776 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 4835 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| | | ||| Sbjct 4836 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAATCGC---TGA-- 4890 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 | ||| || |||||| || || |||| | |||||||||| || | | ||| || Sbjct 4891 GCAAC-GA-CGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCGGCCAGCGACGG 4948 Query 125171 AATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGT 125227 ||||| ||| || || | | | || ||| | ||| | ||| | || |||| Sbjct 4949 CATCGTGGCCGAGAACCTCGCCGGC-CGCTTCATGAAGGAGGT--CCAGGTGCCCGAGGC 5005 Query 125228 GTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 | ||||| ||||| ||||||||| || |||||| | ||||| || |||||||| Sbjct 5006 GCGCTGCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCT 5065 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCG 125346 || || |||| ||| | || || | || || || ||||| ||| |||| Sbjct 5066 CCTCATCGACACCTACGTCAAGGA-CCACGTCGAGAAGGACCGCCTCTTCCGCGCCATCG 5124 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA-- 125404 | || ||||| || | || ||||| | |||| ||| ||||||| | | || Sbjct 5125 AGACCGTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG 5184 Query 125405 -------CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCT 125457 | || | | ||||| | || | | |||||||||||| |||||||||| Sbjct 5185 GCGGTGCCGAGACCTTT---GCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCT 5241 Query 125458 TCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGA 125516 |||| || || || || ||| ||||||| ||||||||||||||||| || |||||||| Sbjct 5242 TCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGC 5300 Query 125517 CTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || | |||||||||| | || || ||||||||||| ||||| ||||||||| Sbjct 5301 CTCGCCTTCAGTAACGAGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCC 5357 >seq46804 Length=3119 Score = 104 bits (114), Expect = 3e-17 Identities = 81/94 (86%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGTTTTGCGGCCATCTT 125485 ||||| | |||||||||||| |||||||||||| | || |||| ||| ||| ||||||| Sbjct 2411 CTGGTCGGATTCGCCGCCGTTGAGGGCATCTTCATCTCCGGGTCGTTCTGCT-CCATCTT 2353 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 ||||||||||||||||| ||||||||||| ||| Sbjct 2352 CTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTG 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740477135051360