Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq56789 113 4e-20 seq59876 107 2e-18 seq61669 86.0 5e-12 >seq56789 Length=1379 Score = 113 bits (124), Expect = 4e-20 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||||||||| ||||| | ||||||| ||||||| || | | Sbjct 612 GACGTTGCCGAGATCGCCGACGTGACGCTCCTCATCGTCGGGTCCGCCGTGCTTCTTGC- 554 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 553 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 494 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| ||||| || Sbjct 493 GGACGTGGAAGCCATG 478 >seq59876 Length=30768 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||||||||| ||||| | | ||||| ||||||| || | | Sbjct 20373 GACGTTGCCGAGATCGCCGACGTGACGCTCCTCATCCTCGGGTCCGCCGTGCTTCTTG-C 20431 Query 21198 CGTA-GGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || | ||||| ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 20432 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 20491 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| ||||| || Sbjct 20492 GGACGTGGAAGCCATG 20507 >seq61669 Length=1808 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || |||| || | ||||||| ||||| || || Sbjct 699 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTACGGCCGTCCTCAAGCTGCTTGCCA 758 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | ||||||||| ||| | |||||| ||||| || ||||| || Sbjct 759 GCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 818 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || |||| | ||| |||| |||||| || || || || | || Sbjct 819 ACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTAATCGTCTTGCCGGTCAGGGTC 878 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 879 TTGACGAAGATCTGCAT 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414255314449384