Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq61753 109 1e-18 seq59302 109 1e-18 seq62774 105 2e-17 seq61669 105 2e-17 seq60152 104 5e-17 seq60456 102 2e-16 seq10324 100 7e-16 seq61614 96.9 8e-15 seq61437 96.9 8e-15 seq56980 87.8 4e-12 >seq61753 Length=5868 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| | || || | ||||| || || || || || Sbjct 5708 GTCGACTCTTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 5649 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || ||||| || ||||||||||| ||| || Sbjct 5648 GCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGC-TT 5590 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || || || ||||| || || || || Sbjct 5589 CACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGT 5530 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 5529 CTTCACAAAGATCTGCATT 5511 >seq59302 Length=3966 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || || Sbjct 1486 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 1427 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || || || || ||||| ||||| ||| || Sbjct 1426 GCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 1368 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || || |||||||| || || || || Sbjct 1367 CACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAGGGT 1308 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 1307 CTTCACGAAGATCTGCATT 1289 >seq62774 Length=14773 Score = 105 bits (116), Expect = 2e-17 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||||| || || | ||||| Sbjct 8424 AAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTC 8365 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| ||||||||||| || ||||| || | Sbjct 8364 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCTTCCTTGT- 8306 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||| ||| || || || || | ||||||||| | || ||||| || || || | Sbjct 8305 ---GATCTTCTGC-TTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGGGTGATCG 8250 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| ||||| || || || || || ||||||||| Sbjct 8249 TCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 8215 >seq61669 Length=1808 Score = 105 bits (116), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 927 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCR 986 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||| || || || || || || ||||| ||||| ||||| Sbjct 987 GCGAAGATGAGRCGCTGCTGATCRGGRGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1046 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || || || ||||| ||||| || || Sbjct 1047 -ACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 1105 Query 104542 TTTTACAAATATCTGCATT-TTGT 104564 || ||||| ||||||||| |||| Sbjct 1106 CTTCACAAAGATCTGCATTGTTGT 1129 >seq60152 Length=76952 Score = 104 bits (114), Expect = 5e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 63349 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 63290 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| |||||||| || || || || || ||||| ||||| ||||| Sbjct 63289 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 63230 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||||| | || ||||| || || || ||||||||||| || || Sbjct 63229 -ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGT 63171 Query 104542 TTTTACAAATATCTGCATTTT 104562 || || || || ||||| || Sbjct 63170 CTTCACGAAGATTTGCATGTT 63150 >seq60456 Length=68670 Score = 102 bits (112), Expect = 2e-16 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| | || || | ||||| || || || || || Sbjct 47168 GTGGACTCTTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 47109 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || ||||| || ||||| ||||| ||| || Sbjct 47108 GCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGC-TT 47050 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | ||| || || | || || || || ||||||||||| || || || | Sbjct 47049 CACGTTCTCGATGGTGTC-TGAGCTCTCGACTTCGAGGGTAATAGTCTTGCCCGTCAGGG 46991 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 46990 TCTTGACGAAGATCTGCAT 46972 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 46443 AAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTC 46384 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| ||||| ||||| || || || || || Sbjct 46383 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTC 46324 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATA 104524 ||||||||| ||| || || || || | || || || | || ||||| || || || Sbjct 46323 CTGAATCTTCTGC-TTGACGTTCTCGATCGTGTC-TGAGCTCTCGACCTCGAGGGTGATG 46266 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT-TTGT 104564 ||||| || || || || || || || ||||||||| |||| Sbjct 46265 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTGT 46225 >seq10324 Length=817 Score = 100 bits (110), Expect = 7e-16 Identities = 123/164 (75%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 104403 CGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTT 104462 |||| || || || || || || || || || | ||| ||||||||||| || ||||| | Sbjct 1 CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCTTCCT 60 Query 104463 TATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 | ||||| ||||| ||| || || || || | || ||||| | |||||||| || || Sbjct 61 TGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTCGACTCTACCTCGAGGGTG 119 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT-TTGT 104564 || ||||| || || || || || ||||| ||||||||| |||| Sbjct 120 ATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATTGTTGT 163 >seq61614 Length=59386 Score = 96.9 bits (106), Expect = 8e-15 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 2747 AAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTC 2806 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| ||||| ||||| || || || || || Sbjct 2807 CTCGAGCTGCTTGCCRGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTC 2866 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATA 104524 ||||||||| ||| || || || || | || || | || | || ||||| || || || Sbjct 2867 CTGAATCTTCTGC-TTGACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATG 2924 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || || || || |||||||| Sbjct 2925 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2959 >seq61437 Length=178460 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 49161 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 49102 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || || || || ||||| ||||| ||| || Sbjct 49101 GCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 49043 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | || | || ||||| || || |||||||| || || || | Sbjct 49042 GACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATAGTCTTGCCCGTCAGAG 48984 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 48983 TCTTGACGAAGATCTGCAT 48965 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | | || | ||||| || || || || || Sbjct 48933 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCG 48874 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || || || || ||||| ||||| ||| || Sbjct 48873 GCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 48815 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || || || || || || ||||| || || || || Sbjct 48814 CACGTTCTCGATCGTGTCGCTCGACTCGACTTCGAGGGTGATGGTCTTGCCGGTGAGGGT 48755 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 48754 CTTCACGAAGATCTGCAT 48737 >seq56980 Length=1463 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || || || || | ||| ||||||||||| || || || || ||||| ||| Sbjct 1462 TGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATC 1403 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||| || || || || | ||| ||||| | || ||||| || ||||| ||||| || Sbjct 1402 TTTTGCTTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGAGTAATCGTCTTGCCC 1343 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 1342 GTGAGAGTCTTGACGAAGATCTGCAT 1317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150471424979888