Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq55806 100 2e-16 seq53197 100 2e-16 seq50875 100 2e-16 seq50874 100 2e-16 >seq55806 Length=3166 Score = 100 bits (110), Expect = 2e-16 Identities = 117/152 (77%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 2438 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 2379 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||||||| ||||| Sbjct 2378 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACGCCCTTTTGC-CCGTG 2322 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | |||||||||||||| || ||| | |||| Sbjct 2321 CCTCGACGCAAACTTGTCTCCGATCACCGGGT 2290 >seq53197 Length=1181 Score = 100 bits (110), Expect = 2e-16 Identities = 117/152 (77%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 729 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 788 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||||||| ||||| Sbjct 789 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACGCCCTTTTGC-CCGTG 845 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | |||||||||||||| || ||| | |||| Sbjct 846 CCTCGACGCAAACTTGTCTCCGATCACCGGGT 877 >seq50875 Length=2032 Score = 100 bits (110), Expect = 2e-16 Identities = 117/152 (77%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 1718 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 1777 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||||||| ||||| Sbjct 1778 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACGCCCTTTTGC-CCGTG 1834 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | |||||||||||||| || ||| | |||| Sbjct 1835 CCTCGACGCAAACTTGTCTCCGATCACCGGGT 1866 >seq50874 Length=2040 Score = 100 bits (110), Expect = 2e-16 Identities = 117/152 (77%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 1726 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 1785 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||||||| ||||| Sbjct 1786 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACGCCCTTTTGC-CCGTG 1842 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | |||||||||||||| || ||| | |||| Sbjct 1843 CCTCGACGCAAACTTGTCTCCGATCACCGGGT 1874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338505369258144