Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07]
62,836 sequences; 75,821,316 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq61614 91.5 1e-13
seq62057 87.8 2e-12
seq60456 86.0 6e-12
>seq61614
Length=59386
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||| | ||| || ||||| || | ||| || ||| | ||| | ||||| |||||
Sbjct 2756 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTG 2815
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
|| || | ||||| | | |||||||| ||||| || || || ||||| | ||| ||
Sbjct 2816 CTTGCCRGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 2875
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||||||| ||| ||||| | | ||||| || | |||||||| || |||||
Sbjct 2876 CTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGT 2935
Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||| |||||||||||
Sbjct 2936 GAGGGTCTTCACGAAGATCTGCAT 2959
>seq62057
Length=255147
Score = 87.8 bits (96), Expect = 2e-12
Identities = 115/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137
|||||||||||| ||| | || ||||||||||||| | | | | ||| ||||| ||
Sbjct 113517 CGCGCCGTGGGAGATCATGCAGTCGCGTTCCATCTCTCCAAACCTGAGACCACCGTCGCG 113576
Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196
|||||| ||| | |||||||| | || || | |||||| || ||| |||| ||
Sbjct 113577 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 113635
Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233
| || ||| || ||||||||| |||| ||||||||
Sbjct 113636 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 113672
>seq60456
Length=68670
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || ||| | ||||| | | |||||||| ||||| || || || |||
Sbjct 46385 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTG 46326
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || ||||||| ||| ||||| | | ||||| || | ||||||
Sbjct 46325 TCCTGAATCTTCTGCTTGACGTTCTCGATCGTGTCTGAGCTCTCGACCTCGAGGGTGATG 46266
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || ||||| |||||||||||
Sbjct 46265 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 46231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447939089676960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |