Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq61614 91.5 1e-13 seq62057 87.8 2e-12 seq60456 86.0 6e-12 >seq61614 Length=59386 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| || ||| | ||| | ||||| ||||| Sbjct 2756 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTG 2815 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | |||||||| ||||| || || || ||||| | ||| || Sbjct 2816 CTTGCCRGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 2875 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||| ||| ||||| | | ||||| || | |||||||| || ||||| Sbjct 2876 CTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGT 2935 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||||||||| Sbjct 2936 GAGGGTCTTCACGAAGATCTGCAT 2959 >seq62057 Length=255147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || ||||||||||||| | | | | ||| ||||| || Sbjct 113517 CGCGCCGTGGGAGATCATGCAGTCGCGTTCCATCTCTCCAAACCTGAGACCACCGTCGCG 113576 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 113577 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 113635 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 113636 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 113672 >seq60456 Length=68670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | |||||||| ||||| || || || ||| Sbjct 46385 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTG 46326 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||||| ||| ||||| | | ||||| || | |||||| Sbjct 46325 TCCTGAATCTTCTGCTTGACGTTCTCGATCGTGTCTGAGCTCTCGACCTCGAGGGTGATG 46266 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||||||||| Sbjct 46265 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 46231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447939089676960