Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq59538 138 2e-28 seq60858 132 8e-27 seq60235 132 8e-27 seq44993 132 8e-27 seq45426 104 4e-18 seq48097 100 4e-17 seq49602 93.3 7e-15 seq60157 80.6 4e-11 >seq59538 Length=16247 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 6479 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 6538 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | ||| | ||| ||||| Sbjct 6539 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGTGTGCTCAAGGTCTTC 6598 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 6599 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 6658 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || | || ||||| | | || ||||| || Sbjct 6659 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCGCACCCTCTACGGTTTCGG 6717 >seq60858 Length=3866 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 3806 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 3747 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 3746 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 3687 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 3686 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 3627 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 3626 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 3586 >seq60235 Length=12452 Score = 132 bits (146), Expect = 8e-27 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 12243 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 12302 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 12303 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 12362 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 12363 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 12422 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || ||||||| ||||||| || Sbjct 12423 ACTGCCATGGACGTCGTCTACGC 12445 >seq44993 Length=1010 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 783 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 842 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 843 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 902 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 903 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCACGCAGGAAGACCGTC 962 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 963 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 1003 >seq45426 Length=771 Score = 104 bits (114), Expect = 4e-18 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 16483 GCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 ||| || |||||| | || ||||| || ||||| ||||||||| |||| || || |||| Sbjct 771 GCCCGCCATCCGTAGGCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTA 712 Query 16543 TGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCA 16602 || |||| || | || | ||| |||||||| ||| ||| |||| || || | Sbjct 711 CGAGGAGACCCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTGAC 652 Query 16603 CTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||||||||||||| | ||||| ||||| ||||||| ||||||| || | || Sbjct 651 CTATACCGAGCACGCCCGCAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCGCTCAA 592 Query 16663 ACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | || ||||| | | || ||||| || Sbjct 591 GAGGCAGGGCCGCACCCTCTACGGTTTCGG 562 >seq48097 Length=516 Score = 100 bits (110), Expect = 4e-17 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | || ||||| || ||||| ||||||||| |||| || || |||| ||||||| Sbjct 1 CCGTAGGCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGAC 60 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| |||||||| ||| ||| |||| || || | ||| ||||| Sbjct 61 CCGTGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGA 120 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||||| ||||| ||||||| ||||||| || | || | || || Sbjct 121 GCACGCCCGCAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGG 180 Query 16672 CCG 16674 ||| Sbjct 181 CCG 183 >seq49602 Length=1133 Score = 93.3 bits (102), Expect = 7e-15 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||||||| |||| || || |||| ||||||| || | Sbjct 5 CTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGC 64 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || | ||| |||||||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 65 GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCA 124 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | ||||| ||||| ||||||| ||||||| || | || | || ||||| Sbjct 125 CGCAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 180 >seq60157 Length=1725 Score = 80.6 bits (88), Expect = 4e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 1634 CTACGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1693 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGA 16545 || ||||||||| |||| || || |||| || Sbjct 1694 GGTGTCAAGCGTATCTCGGGCATGATCTACGA 1725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79017748605348