Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq60152 100 3e-16 seq59302 98.7 9e-16 seq62514 95.1 1e-14 seq56980 91.5 1e-13 seq61614 89.7 5e-13 seq56988 89.7 5e-13 seq60456 86.0 6e-12 >seq60152 Length=76952 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | || || || || | ||||| || | |||||| |||| | || || Sbjct 63150 AACATGCAAATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGTCG 63209 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||||||| | || || || ||||| ||||| || || || || || ||| Sbjct 63210 AGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGAT 63269 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | || |||||| || ||||| || | | | || |||||| Sbjct 63270 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTAC 63329 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || ||||| Sbjct 63330 AACATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 63364 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||||||| |||| | ||||| | Sbjct 63381 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTCGAATCCTCC 63440 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || || ||||| || Sbjct 63441 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 63500 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| || ||||| || | | | | | |||||| ||| Sbjct 63501 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 63560 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || ||| |||| || || || | ||| | ||||| Sbjct 63561 ATCCAGAAAGAGTCGACTCTCCACCTCGTTCTTCGTCTTCGCGGAGG 63607 >seq59302 Length=3966 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| ||| |||| | || || | | Sbjct 1518 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACCCTCGAGGTCGAGTCGAGC 1577 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 1578 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1637 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | || ||||| ||| Sbjct 1638 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 1697 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || ||||| |||| || ||||| Sbjct 1698 ATCCAGAAGGAGTCTACCCTCCACCTCGTCCT 1729 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | || ||| |||| | || || | | Sbjct 1974 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCGAGC 2033 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 2034 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 2093 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| || ||||| || | | | | | | |||||| ||| Sbjct 2094 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAAC 2153 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || || || Sbjct 2154 ATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 2185 >seq62514 Length=5924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| |||| | || || | | Sbjct 4303 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC 4244 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || || |||||||| Sbjct 4243 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAG 4184 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | |||||| ||| Sbjct 4183 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 4124 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || ||||||| || || Sbjct 4123 ATCCAGAAGGAGTCCACGCTCCATCTCGTTCT 4092 >seq56980 Length=1463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | ||||| || | |||||| ||||| | || || | Sbjct 860 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCGAG 919 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || || ||||| ||||| || || || || || ||||| Sbjct 920 CGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 979 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || |||||| || ||||| || | | | | | |||||| || Sbjct 980 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 1039 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || || || Sbjct 1040 CATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 1072 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| || |||| | || || | | Sbjct 1089 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACGATTACTCTCGAGGTTGAGTCGAGC 1148 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || |||||||| || Sbjct 1149 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 1208 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | | |||||| ||| Sbjct 1209 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAAC 1268 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || || || Sbjct 1269 ATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 1300 >seq61614 Length=59386 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| || |||| | || || | | Sbjct 2731 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGAGC 2672 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || || || ||||| ||||| ||||| || ||||||||||| Sbjct 2671 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 2612 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | |||||| ||| Sbjct 2611 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 2552 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || || || Sbjct 2551 ATCCAGAAGGAGTCSACKCTCCAYCTCGTTCT 2520 Score = 82.4 bits (90), Expect = 7e-11 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | ||||| || |||||| ||||| || || || ||||||||||| Sbjct 2899 GACACGATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 2840 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| || ||||| || | | | || |||||| ||| Sbjct 2839 CAGCGCCTCATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 2780 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| || || || Sbjct 2779 ATCCAGAAGGAGTCGACTCTCCACCTCGTTCT 2748 >seq56988 Length=1639 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | || || || | |||||| |||| | || || | Sbjct 907 AATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAGTCGAG 848 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| |||||| | || || || ||||| ||||| || || || ||||||||||| Sbjct 847 CGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 788 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || ||||| || | | | | | |||||| || Sbjct 787 GCAGCGCCTCATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 728 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || || || Sbjct 727 CATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 695 >seq60456 Length=68670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 47032 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCAG 47091 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | || |||||| ||| Sbjct 47092 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 47151 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| || || |||| || ||||| Sbjct 47152 ATCCAGAAAGAGTCCACCCTCCACCTCGTCCT 47183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 26763 AACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||||| |||||| | || || || || | || || || | |||||| |||| | || Sbjct 46224 AACAACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGA 46283 Query 26822 -ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 | | | ||||| |||||| | ||||| || |||||| ||||| || || || |||| Sbjct 46284 GAGCTCA-GACACGATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTC 46342 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 ||||||| || | ||||| | || |||||| || ||||| || | | | | | || Sbjct 46343 CCGATCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCG 46402 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| || || || || || |||| || || || Sbjct 46403 ACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 46442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478286434617920